Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00481 ATGTCCTTCAAAAGCTTTTTTCGCGAGCTATGGGAAATCAAAGACGGACTCACAATCAAACCGAAGCGAGGGGGAGAAGGAAGGAACTGGCGAAGTCGAACCAGGTCACATATTGCACCTGATGAAGTGCCTCCTCAGCCTGAAGCAATTCAGCAAGGCCAGTGGGCAAATTTGCCTCCTGAGTTGCTTTTGGACATAATTCGAAGAGTAGAAGAGAGTGAAACCTCGTGGCCTGCTAGGACTGCTGTCCTGTTTTGTGCTTCAGTGTGCAAGTCATGGAGAAACATTACGAAGGAAGTTGTCAAAACTCCTGAGCAGTGTGGGAGGCTCACGTTTCCCATTTCACTGAAACAGCCGGGACCTCGAGACTCCCCAATTCAATGCTATGTTAGAAGGCACCGAGCAACTTCGACCTATCGTCTATACTCCGGATTGGTGCCTTCGGAGAATGAAAGTGATAAACTCTTATTAGCAGCTAAGAGAGTAAGAAGGGCTACAGGTACAGATTTTGTCATATCACTGGTTGCTGATGATTTTTCCTGGACCCACAGTACCTATGTAGGCAAATTAAGGTCCAACTTCTTTGGCACAAAGTTCACCATGTATGATACTCAACCGCCAGTTCTCCCTGTAGTGCAACAGAATAATCAATCAACCCGTTCATTTCATGCCAAGCAAGTCTCTCCAAGAATGTCAGCTTGTAACTACACTACAGGGGCAATCTCTTATGAGCTTAATGTTCTACGCACTAGAGGGCCCAGAAGAATGCACTGTGCCATGCACTCAATCCCTGTATCTTGCATTCAACAGGGAGGAAATGCACCGACACCAATGTCATTCACGGCCTGTGTCGATGACCAATGCTCTCCTCTACCAGCTTCTAAAGGAAAGGAGCCAGAGACAGAGGCAAGTTCCACATGCATCCAAGGTGCACAGGTTCAAGATTTGGGAGAATCCTTGGTTCTCAAGAACAAGGCTCCTAGATGGCACGAACAGCTTCGATGCTGGTGCTTGAACTTCAGAGGACGTGTGACAGTAGCTTCTGTAAAAAACTTTCAACTCGTGGTCGATGTAGATCCTGCCCTCAATGTGTCGGTTGAAGAACAAGAGAAGATAATATTGCAGTTTGGGAAAATTGGAAAGGACATCTTCACAATGGATTATCGCTACCCGCTCTCCACCTTCCAAGCATTCGCAATCTGCTTGAGTAGCTTCGACACCAAACCAGCATGTGAATAG 1239 46.73 MSFKSFFRELWEIKDGLTIKPKRGGEGRNWRSRTRSHIAPDEVPPQPEAIQQGQWANLPPELLLDIIRRVEESETSWPARTAVLFCASVCKSWRNITKEVVKTPEQCGRLTFPISLKQPGPRDSPIQCYVRRHRATSTYRLYSGLVPSENESDKLLLAAKRVRRATGTDFVISLVADDFSWTHSTYVGKLRSNFFGTKFTMYDTQPPVLPVVQQNNQSTRSFHAKQVSPRMSACNYTTGAISYELNVLRTRGPRRMHCAMHSIPVSCIQQGGNAPTPMSFTACVDDQCSPLPASKGKEPETEASSTCIQGAQVQDLGESLVLKNKAPRWHEQLRCWCLNFRGRVTVASVKNFQLVVDVDPALNVSVEEQEKIILQFGKIGKDIFTMDYRYPLSTFQAFAICLSSFDTKPACE 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2099589 2102617 + CmaCh07G004810.1 Cma07g00481 297796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00481 412 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Cma07g00481 412 Gene3D - 48 101 - -
Cma07g00481 412 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 412 - -
Cma07g00481 412 SUPERFAMILY Tubby C-terminal domain-like 104 412 IPR025659 -
Cma07g00481 412 MobiDBLite consensus disorder prediction 22 47 - -
Cma07g00481 412 Pfam Tub family 116 407 IPR000007 -
Cma07g00481 412 ProSitePatterns Tub family signature 1. 340 353 IPR018066 -
Cma07g00481 412 PANTHER TUBBY-RELATED 1 412 - -
Cma07g00481 412 MobiDBLite consensus disorder prediction 22 38 - -
Cma07g00481 412 Gene3D Tubby Protein; Chain A 113 412 IPR025659 -
Cma07g00481 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Cma07g00481 412 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Cma07g00481 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Cma07g00481 412 Pfam F-box domain 55 101 IPR001810 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00481 Cma-Chr7:2099589 Cma04g00503 Cma-Chr4:2572388 3.05E-150 dispersed
Cma08g00582 Cma-Chr8:3323496 Cma07g00481 Cma-Chr7:2099589 7.21E-14 dispersed
Cma01g01916 Cma-Chr1:12484871 Cma07g00481 Cma-Chr7:2099589 2.32E-179 wgd
Cma16g00616 Cma-Chr16:3186287 Cma07g00481 Cma-Chr7:2099589 0 wgd
Cma04g00753 Cma-Chr4:3838952 Cma07g00481 Cma-Chr7:2099589 0 wgd
Cma07g00481 Cma-Chr7:2099589 Cma09g00148 Cma-Chr9:634904 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35364 PF01167 Tub 2.70E-101 CL0395 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00481 K19600 - csv:101221704 717.998