Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00485 ATGGAGATGAGAGGTGAAGATGAGGAAATAGGAACTCCTTCCCCTTTGTGCTATCAATCAAATACGGAATCTTCAACCAAACTGCCTAATTCTGATCATACACATCTAACACCAGCTGATACCAGAAGAGATCACACAGTACCCCAGCTCCATTTCTCTCATCAACTGAATCAAAACCATCACAAACTGAGTCTGCATCAGTATTTACACAAACACACAACAGACCATCCTGTAGCAACAACCCCAGATCCAGTCCAGACCTCCGTTACTGCCTCACCCTCTGCAGTTACTCAGCCGATTGCAAGCAGCAGATCAACCTCAAGAACACCACCTGCAAGTAATAATGTTATTCCTCCAGTTCGGTATCGAGAATGTTTGAAGAACCACGCAGCGAGTACTGGAGGCCATGTTCTCGATGGTTGTGGCGAGTTCATGCCTGGTGGAGAAACTGGAACGCCCGAGGCCTTGAAGTGTGCAGCCTGTGAATGCCATCGGAACTTTCACCGGAAAGAGGTGAAAGATCACGAGCCCACACAGCTTGCTGTACCCAGTGGCTTTTTCATCTCCAATACCATCAGAAACAATGGCCATCACACTGATAGGTCACCAGTTCCACTCTCCCGCCACCATCAATTGCCGGCAGTTCCAATTTCTTCGATGATGGCATTTGGAGGAAGCAATGGAGCTCCGGACGAGTCTTCAAGTGAAGATCTAAACATGTTTCACCAGTCCAATAATGGAGCCCGGGACCTGTTCGGTCAGCAGCAACAATTAATGAAAAAACGATTTAGAACAAAGTTCACACAGGGACAGAAGGACAAGATGGAAGAGTTTGCTGAAAAACTGGGGTGGAGAATTCAGAAACACGATGAATTGGAAGTGCAGCAGTTCTGCGCTGAGGTGGGCGTAAGGAGGCAAGTTTTCAAGGTTTGGATGCACAACAACAAACAAGCCATGAAGAAGAAACAAACGTAA 975 46.87 MEMRGEDEEIGTPSPLCYQSNTESSTKLPNSDHTHLTPADTRRDHTVPQLHFSHQLNQNHHKLSLHQYLHKHTTDHPVATTPDPVQTSVTASPSAVTQPIASSRSTSRTPPASNNVIPPVRYRECLKNHAASTGGHVLDGCGEFMPGGETGTPEALKCAACECHRNFHRKEVKDHEPTQLAVPSGFFISNTIRNNGHHTDRSPVPLSRHHQLPAVPISSMMAFGGSNGAPDESSSEDLNMFHQSNNGARDLFGQQQQLMKKRFRTKFTQGQKDKMEEFAEKLGWRIQKHDELEVQQFCAEVGVRRQVFKVWMHNNKQAMKKKQT 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2110438 2111412 - CmaCh07G004850.1 Cma07g00485 297800

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00485 324 MobiDBLite consensus disorder prediction 74 116 - -
Cma07g00485 324 MobiDBLite consensus disorder prediction 14 35 - -
Cma07g00485 324 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 122 171 IPR006456 -
Cma07g00485 324 MobiDBLite consensus disorder prediction 1 41 - -
Cma07g00485 324 SUPERFAMILY Homeodomain-like 257 321 IPR009057 -
Cma07g00485 324 MobiDBLite consensus disorder prediction 79 114 - -
Cma07g00485 324 Gene3D - 248 321 - -
Cma07g00485 324 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 58 322 - -
Cma07g00485 324 Pfam ZF-HD protein dimerisation region 120 172 IPR006456 -
Cma07g00485 324 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 260 317 IPR006455 -
Cma07g00485 324 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 121 172 IPR006456 -
Cma07g00485 324 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 58 322 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00485 - - - csv:101220687 491.5
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00745 Cma07g00485 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00248 Cma-Chr5:1049849 Cma07g00485 Cma-Chr7:2110438 2.82E-68 dispersed
Cma06g00008 Cma-Chr6:32657 Cma07g00485 Cma-Chr7:2110438 8.33E-54 dispersed
Cma07g00485 Cma-Chr7:2110438 Cma07g00562 Cma-Chr7:2432332 9.10E-53 dispersed
Cma15g00273 Cma-Chr15:1296186 Cma07g00485 Cma-Chr7:2110438 3.65E-22 dispersed
Cma16g00621 Cma-Chr16:3204804 Cma07g00485 Cma-Chr7:2110438 9.00E-33 dispersed
Cma18g01152 Cma-Chr18:9258379 Cma07g00485 Cma-Chr7:2110438 2.02E-44 dispersed
Cma03g00745 Cma-Chr3:5899158 Cma07g00485 Cma-Chr7:2110438 1.27E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35365 PF04770 ZF-HD_dimer 1.50E-30 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00485 Cma_Chr07 FPKM 10.766154 10.769688 45.597359 42.607941 22.202879 26.385408 20.788383 4.292158 4.018629 3.207002