Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00493 ATGTGTGCCGACAGTGGCAATCTAATGGCGATTGCTCAGCAAGTTATGAAGCAGAAGCAGCAACAGGAGCAGCAGCAGCCTCCACAAGAGCCGCCGCCGCAGCAGCTCACTAGCCCTTCCACTTTTACTCTGAACCCATGGAGTGGCTCGAACCATGGTCTATCCAGTCCGGATTTGGGGTTTGGGCTTGCCGGAGCTGGATTTTCCGATCCGTTTCAGGTGCAGAGAGTGGTCGACGGTGGAGAAACGAGCTTTCAGTTTCCGAACTTAGAGCACCATTCTTCTTCTTTCAGATATCCCGATTTCGACGGCGGCGCTGCTGCAGATTTCGATTCCGATGAGTGGATGGAGAGTCTAATGGCTGGTGGAGATTCAACGGATAGCTCTAATCTTCCTTCTGGTTGCGACGCGTGGCAGGCTAATTCGGATATTGCTCTCTACGGTGATGATCCCTTTGTCCCCTGTCCCAGTCGCCTCACTATCCCCTGTTCTTCACCCTCCGATCTCAACAGAGTCATTTTCCCGGAACCTCCGAAAAATCAAGCCGCCATTCAACCGCCTGTGGTTTCATGGACCGGGCTTACTCCCAAGACTCCACCGGTGGTGGTTAAGGACACTAACGGCTGTTCGTCGAGTTCTGCAGAGAACGAACCGACAACGCCACTTCTGAAAACCCTAATTGAATGTGCTAGACTTTCCGAATCGGAACCAAATCGGGCGGCGCAAATATTTATCCAGCTTAAGGAATCGTCATCGGAGCATGGAGATCCGACGGAGAGAGTCGCTTTTTACTTCCTCGAAGCTCTGTACAGGAGATTATCACTTCAAACGGAGAATCGTTTGGTTTGTTCGGAATCCACTTCAGATGATTTCACCATATCTTACAAAGCTCTCAACGACGCCTGCCCGTACTCTAAATTTGCCCATTTGACTGCGAATCAAGCGATACTCGAAATGACAGAGAACGCGAGCAAGATTCACATAATCGACTTTGGAATTTCTCAGGGAGTTCAATGGGCGGCGCTTCTTCAAGCTCTCGCAACCCGCTCCTCTGGAAAACCAACCGGAATCCGGATCTCCGGCATTCCAGCTCCAATGCTCGGAAACTGCCCAGCCACAGCGCTGTTCGCGACGGGTAATCGACTGGCCGAGTTTGCCAAGCTTCTAGAACTGAACTTCGAATTTGACCGAATCCTCACCCCAATCGAAGAGCTGAAAGAATCCTCGTTCCGAATCGAGTCGGACGAAACCCTCGCCGTGAATTTCATGCTTCAACTGTACAATCTGCTCGACGAAACTCCTCGCCTCGTTCTGAACGTTTTGCGACTCGCTAAATCACTGAGCCCTAGAATCGTAACCCTAGGCGAATACGAAGCCAGCCTGAATCGGGTCGGGTTCTTTAACCGGTTCAAGAACGCAGTCCGATACTACTCAGCCGTGTTCGAATCACTGGACCCAAAATTACCTCGCAACTCAAACGAAAGGCTGCAACTGGAAAAGCTCGTACTCGGGCGGCAGATCGGCGACATTGTCGGACCAGAGTCGTCGCCGGGAGCCAAAATCGAACGGATGGAAGACAAAGAACAGTGGAAAATGATGATGGAAAATTGCGGGTTTGAAGCGGTAAATCTCAGCCATTACGCGAAAAGTCAAGCTCAAATCCTTTTATGGAAGTATGATTACAGCTGTGAGTATTCTTTGATCGAATCCTCGCCGGGATTTCTCTCGTTGGCCTGGAATCAAGTCCCGATCATTACAGTTTCTTCCTGGCGTTGA 1776 50.68 MCADSGNLMAIAQQVMKQKQQQEQQQPPQEPPPQQLTSPSTFTLNPWSGSNHGLSSPDLGFGLAGAGFSDPFQVQRVVDGGETSFQFPNLEHHSSSFRYPDFDGGAAADFDSDEWMESLMAGGDSTDSSNLPSGCDAWQANSDIALYGDDPFVPCPSRLTIPCSSPSDLNRVIFPEPPKNQAAIQPPVVSWTGLTPKTPPVVVKDTNGCSSSSAENEPTTPLLKTLIECARLSESEPNRAAQIFIQLKESSSEHGDPTERVAFYFLEALYRRLSLQTENRLVCSESTSDDFTISYKALNDACPYSKFAHLTANQAILEMTENASKIHIIDFGISQGVQWAALLQALATRSSGKPTGIRISGIPAPMLGNCPATALFATGNRLAEFAKLLELNFEFDRILTPIEELKESSFRIESDETLAVNFMLQLYNLLDETPRLVLNVLRLAKSLSPRIVTLGEYEASLNRVGFFNRFKNAVRYYSAVFESLDPKLPRNSNERLQLEKLVLGRQIGDIVGPESSPGAKIERMEDKEQWKMMMENCGFEAVNLSHYAKSQAQILLWKYDYSCEYSLIESSPGFLSLAWNQVPIITVSSWR 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2130556 2132331 - CmaCh07G004930.1 Cma07g00493 297808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00493 591 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 223 590 - -
Cma07g00493 591 MobiDBLite consensus disorder prediction 36 51 - -
Cma07g00493 591 MobiDBLite consensus disorder prediction 1 51 - -
Cma07g00493 591 MobiDBLite consensus disorder prediction 11 25 - -
Cma07g00493 591 ProSiteProfiles GRAS family profile. 213 591 IPR005202 -
Cma07g00493 591 Pfam GRAS domain family 223 591 IPR005202 -
Cma07g00493 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 223 590 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00493 Cma16g00656 CCT
Cma03g00756 Cma07g00493 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00784 Cma-Chr4:3996533 Cma07g00493 Cma-Chr7:2130556 0 dispersed
Cma07g00493 Cma-Chr7:2130556 Cma16g00656 Cma-Chr16:3424282 0 dispersed
Cma03g00756 Cma-Chr3:5947647 Cma07g00493 Cma-Chr7:2130556 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35367 PF03514 GRAS 5.50E-111 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00493 - - csv:101218550 965.681