Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00495 ATGAAGGACGACGATGTCCTTCCGACGACGATAGCGAGTGCCGGGAAGAAAGAGAGCTCGGTTTCGAGTTTATTCGGAAAATGCCGTTACAAGTTCTGGGCATTGGCTGCCATTTTGTTGCTCGCATTTTGGTCCATGTTCACCGGTACTGTCTCTCTTCGATGGTCCGCTGGTAATCTCAACAGCCTGTCTGATAATATCGATTTTAACATCCATGACGATCTCGATGTGCTTGAGATGGAGGAAAGGGAGAAGACGGTGAAGCACATGTGGGACGTTTACACAAATAATCACCGTATCAGGTTACCGAGTTTCTGGCTAGAGGCATTCGAGGCTGCGTACGAGGACCTAACCAGTGAAGTGCCTGGTGATAGAGAGGCTGCTATCTCCGAGATCGCCCGGATGTCCGTGCGCTCCATTGTTATTGATACGCCTGCAGAGAAATCAACGTCTTACCGACGATCGTGCGCTGCCATGGGAGATTACAATGATGCCTTCATGCGGAACCAAAACGCCGCGGTTCAGGCTCGTACCAAGGCCCAGAATCGTGCTAATGTCCTTCAGCTTAAGCTGATTGGGCAGAGTCATCCCACTGGTCTTACGGCCAATCTCCTGAAGCTCTTTGAGCCCCGACCGCCTTTGGAGTATAAGCCTCCACCAGAAAAAAGAAAATGTCCTCCATTAACAGGGATGGCCCAGTTTGTTAGTCATTTTGCAGAACCTGATGATCCGGAATATGCCCCCCCTGTTCAAGAGGGTGAAACTCCCTCGCAAAGGAGGGCCAGAATTCACTTGTTAAGAATTGAAAAGGGTGCACAGAAAGCTGCCGAGGAGCTTCCAAAATATCTTGAACGTGATGATCCAAATGTTACTGGAGATCCATACAAAACTCTCTTTGTGGCTAGACTGAACTATGAGACATCTGAGAGCAGAATCAAAAGAGAGTTTGAGTCATATGGGCCAATCAAACGGGTCCGATTGATTACAGACAAGGTGACAGGTAAACCTAAAGGCTATGCTTTCATTGAGTACATGCACAAAAGAGATATGAAAGCTGCATATAAACAAGCTGATGGTAGGAAGATTGATGGTAGAAGGGTACTAGTGGATGTTGAGCGAGGTAGAACTGTACCAAATTGGCGTCCTCGTCGGCTGGGTGGTGGTCTTGGAACCACCAGAGTGGGAGGTGAAGAAAATAGCCAGAGGCATGCTGGAAGGGAGCAACAGCAATCTGGAGCACCATCTCGATCAGAGGAGCCTAGGGCTCGTGAAGATCGCCATGGAGAGCGAGATAGGGAAAAGTCTTATGAAAAAGGAAGAGACAGAGAAAGAGAGAGAGAGAAGTCTCGGGAACGTTCCCATGATAGATCTAAGGATCATGATCTCAGAGAAGACCGACATCACAGAGATCGTGATAGGACAAGAGATAGGGATAGGGATAGAGAAAAGGAAAGGGAAAGAGAGAGAGAGCGTGGGCATGACCGTGATAGAACACGTGATCGTGATCGAGGAAGGGATCGAGGTCGTGATTATGAGCGGGACAGAGATCGTGATCGGGATCGTCATCGGGACAGAGATAGGGAGAGGGATCGGGATCACGGAGGGGGATATGCAGACCCTGATCGTGGTCGCTCCCATGATAGGGAATCTGATTATGATCGGGTAGATTCGAAATATGAAAAGGACAGACATGGTGATAGGGACAAAGATATTGATCCTGGTGAAACTGAGGATGGTCATGGGTGGTATGATCAGCCTGTGCATGGGCACAGACACCCACCAGATACTGATCATGATCCCCAATACTATGATCACTTCGAACACAACCGAAGTCGAGAGCAATATGATCACCCCGAACATCATGGCCAAGATCGTTATGATCAGTATGATAGAATGGAGGATGATTACCGTTACGAACGTGGCACTTCTGAAACACGTGATAGAGAGAGGTCGCGTGATTTGAATCATGAATATAGACGTGCAGATAGATCTCACTCAAGAGAGTTTTAG 2010 48.16 MKDDDVLPTTIASAGKKESSVSSLFGKCRYKFWALAAILLLAFWSMFTGTVSLRWSAGNLNSLSDNIDFNIHDDLDVLEMEEREKTVKHMWDVYTNNHRIRLPSFWLEAFEAAYEDLTSEVPGDREAAISEIARMSVRSIVIDTPAEKSTSYRRSCAAMGDYNDAFMRNQNAAVQARTKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSHFAEPDDPEYAPPVQEGETPSQRRARIHLLRIEKGAQKAAEELPKYLERDDPNVTGDPYKTLFVARLNYETSESRIKREFESYGPIKRVRLITDKVTGKPKGYAFIEYMHKRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEENSQRHAGREQQQSGAPSRSEEPRAREDRHGERDREKSYEKGRDREREREKSRERSHDRSKDHDLREDRHHRDRDRTRDRDRDREKERERERERGHDRDRTRDRDRGRDRGRDYERDRDRDRDRHRDRDRERDRDHGGGYADPDRGRSHDRESDYDRVDSKYEKDRHGDRDKDIDPGETEDGHGWYDQPVHGHRHPPDTDHDPQYYDHFEHNRSREQYDHPEHHGQDRYDQYDRMEDDYRYERGTSETRDRERSRDLNHEYRRADRSHSREF 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2135581 2144707 - CmaCh07G004950.1 Cma07g00495 297810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00495 669 PANTHER - 159 515 - -
Cma07g00495 669 Gene3D - 284 408 IPR012677 -
Cma07g00495 669 SMART rrm1_1 297 370 IPR000504 GO:0003723
Cma07g00495 669 Pfam Protein of unknown function (DUF1195) 11 146 IPR010608 -
Cma07g00495 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 367 IPR000504 GO:0003723
Cma07g00495 669 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 159 515 - -
Cma07g00495 669 CDD RRM_snRNP70 295 385 IPR034143 GO:0030619
Cma07g00495 669 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 199 287 IPR022023 -
Cma07g00495 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Cma07g00495 669 SUPERFAMILY RNA-binding domain, RBD 285 399 IPR035979 GO:0003676
Cma07g00495 669 MobiDBLite consensus disorder prediction 378 669 - -
Cma07g00495 669 MobiDBLite consensus disorder prediction 417 669 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00495 K11093 SNRP70; U1 small nuclear ribonucleoprotein 70kDa - csv:101218309 535.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g00761 Cma07g00495 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00761 Cma-Chr3:5963667 Cma07g00495 Cma-Chr7:2135581 2.47E-72 dispersed
Cma05g00231 Cma-Chr5:984273 Cma07g00495 Cma-Chr7:2135581 4.68E-42 dispersed
Cma07g00495 Cma-Chr7:2135581 Cma12g00480 Cma-Chr12:2503535 5.12E-31 dispersed
Cma06g01609 Cma-Chr6:10023005 Cma07g00495 Cma-Chr7:2135581 1.34E-27 transposed
Cma03g00757 Cma-Chr3:5954034 Cma07g00495 Cma-Chr7:2135581 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g948 Blo04g00922 . . . . . Bma09g00072 . . . Cma03g00761 Cma07g00495 Car03g00695 Car07g00435 Sed14g1107 Cpe19g00805 Cpe10g00602 Bhi03g01282 Tan03g1968 Cmetu08g1737 . Hepe04g1499 . . Cla01g01896 . . . . . . Cone8ag0801 Cone12ag0751 Cone6ag1612 . Lsi01g00686 . . Cme08g00837 Blo05g00790 . . . . Bpe06g00049 . . . Cmo03g00789 Cmo07g00497 . . . . . . . . . . . . . . . . . . . . . Csa06g03229 Chy02g00659 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007233 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00495 Cma_Chr07 FPKM 71.388283 76.587555 73.734779 71.443352 94.022583 111.566566 84.6157 130.775925 133.051834 115.784729