Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00499 | ATGCCGGTCGACTTGGACAGTTCCTCACCGGCTTCCGGCGAACCCACAGTCTCCACCCCGGGAAATCCTGCCTCGCCTCCCAACTCCGCCGTAAGGAAAAAGCGAAACCTCCCTGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACTCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCGGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTTACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAAATACGGCGTTCAGTCCGATTGGAAAGCCCACTCCAAAATTTGTGGCACTCACGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCATTCTGTGATGTATTGGCGGAGGAAAGGGCAAAAGCTCTGCTTAAACCGGTGGGGAATTCTCAGACGGCGGTGGGGAAACCGAATCCGGAGCCTTCTCCACCATCGCCACCGCCTCCATCTCCTCTGCAGTCAGCTTGTGAGCCAACAACTGTGTTGGCTGTTCCAAGTCAAGAGCTGCCAGAGAATCCCTTGCAATGTATCGAAGAGGCAGCCGGTATGTCGGGTACGAGTCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGTAGCACGAGAAGTAGCAGATTTGCTGGCTTATTTGCTTCCTCAACTACGTCGATGAGCCTCCAACCTCCAAGACCATATAGAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCACCAGACTATGCATCATCTTCAACCATCGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGCCCTCAATGTTCGGAACTGCCAGCCAATACCACCGACCGTACTTACCAATGCCACACCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAGTGGGCGCAGCGGCATCAAATGCGTCGTTGCTTCGTGGCTTAGGCTTAGTGTCATCTTCCTCTGCAGCTGCCCAGCAAGAGATCTTGGCATGGAACCACCAGAGGCGAGTCGAACCAGATGACGTATCATTCGCTGCAGGGCTCGGCCTCGGACTCCCCTGTGATGGGAACTCGGGATTGAAACAACTAACAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTGGATTTCCTTGGATTGGGAATGGCGGCTGGTGGAAGCCCCAACAGCGGCCTGGCCGCACTAATCACATCAATAGGCGGGAGTGTGGACGTTACAACCACAACCACCAGATCATACGGCGCTACTGACATATCCACCATAGACATGAACACAAATAATTGA | 1491 | 51.71 | MPVDLDSSSPASGEPTVSTPGNPASPPNSAVRKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRRRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKKYGVQSDWKAHSKICGTHEYKCDCGTLFNRRDSFITHRAFCDVLAEERAKALLKPVGNSQTAVGKPNPEPSPPSPPPPSPLQSACEPTTVLAVPSQELPENPLQCIEEAAGMSGTSRSSSSSSSSSSNGSTRSSRFAGLFASSTTSMSLQPPRPYRDLMQAMACSDRSPDYASSSTIEPISLCLAMNQGPSMFGTASQYHRPYLPMPHPAMSATALLQKAAQVGAAASNASLLRGLGLVSSSSAAAQQEILAWNHQRRVEPDDVSFAAGLGLGLPCDGNSGLKQLTRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGGSVDVTTTTTRSYGATDISTIDMNTNN | 496 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2152878 | 2154694 | + | CmaCh07G004990.1 | Cma07g00499 | 297814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00499 | 496 | SUPERFAMILY | beta-beta-alpha zinc fingers | 60 | 157 | IPR036236 | - | |
Cma07g00499 | 496 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 83 | IPR013087 | - | |
Cma07g00499 | 496 | MobiDBLite | consensus disorder prediction | 9 | 26 | - | - | |
Cma07g00499 | 496 | Gene3D | Classic Zinc Finger | 41 | 111 | - | - | |
Cma07g00499 | 496 | Pfam | Zinc finger, C2H2 type | 61 | 83 | IPR013087 | - | |
Cma07g00499 | 496 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Cma07g00499 | 496 | MobiDBLite | consensus disorder prediction | 255 | 278 | - | - | |
Cma07g00499 | 496 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cma07g00499 | 496 | SMART | c2h2final6 | 137 | 162 | IPR013087 | - | |
Cma07g00499 | 496 | SMART | c2h2final6 | 61 | 83 | IPR013087 | - | |
Cma07g00499 | 496 | SMART | c2h2final6 | 102 | 132 | IPR013087 | - | |
Cma07g00499 | 496 | MobiDBLite | consensus disorder prediction | 199 | 229 | - | - | |
Cma07g00499 | 496 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 488 | - | - | |
Cma07g00499 | 496 | MobiDBLite | consensus disorder prediction | 210 | 227 | - | - | |
Cma07g00499 | 496 | PANTHER | ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 | 1 | 488 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00499 | Cma-Chr7:2152878 | Cma12g00483 | Cma-Chr12:2520186 | 8.61E-122 | dispersed | |
Cma07g00499 | Cma-Chr7:2152878 | Cma07g00501 | Cma-Chr7:2157354 | 0 | proximal | |
Cma01g01894 | Cma-Chr1:12396752 | Cma07g00499 | Cma-Chr7:2152878 | 1.56E-138 | wgd | |
Cma16g00651 | Cma-Chr16:3386134 | Cma07g00499 | Cma-Chr7:2152878 | 3.30E-148 | wgd | |
Cma03g00762 | Cma-Chr3:5974951 | Cma07g00499 | Cma-Chr7:2152878 | 0 | wgd | |
Cma07g00499 | Cma-Chr7:2152878 | Cma09g00169 | Cma-Chr9:719687 | 3.45E-122 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35368 | PF00096 | zf-C2H2 | 0.005 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00499 | K25869 | - | csv:101217597 | 646.736 |