Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00499 ATGCCGGTCGACTTGGACAGTTCCTCACCGGCTTCCGGCGAACCCACAGTCTCCACCCCGGGAAATCCTGCCTCGCCTCCCAACTCCGCCGTAAGGAAAAAGCGAAACCTCCCTGGAATGCCAGATCCGGAAGCGGAAGTAATTGCTCTGTCTCCGAAGACTCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCGGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTTGGTGATCTTACTGGGATTAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAATGGAAATGCGGTAAGTGTTCTAAGAAATACGGCGTTCAGTCCGATTGGAAAGCCCACTCCAAAATTTGTGGCACTCACGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCATTCTGTGATGTATTGGCGGAGGAAAGGGCAAAAGCTCTGCTTAAACCGGTGGGGAATTCTCAGACGGCGGTGGGGAAACCGAATCCGGAGCCTTCTCCACCATCGCCACCGCCTCCATCTCCTCTGCAGTCAGCTTGTGAGCCAACAACTGTGTTGGCTGTTCCAAGTCAAGAGCTGCCAGAGAATCCCTTGCAATGTATCGAAGAGGCAGCCGGTATGTCGGGTACGAGTCGGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATGGTAGCACGAGAAGTAGCAGATTTGCTGGCTTATTTGCTTCCTCAACTACGTCGATGAGCCTCCAACCTCCAAGACCATATAGAGACCTAATGCAAGCCATGGCTTGTTCAGATCGCTCACCAGACTATGCATCATCTTCAACCATCGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGCCCTCAATGTTCGGAACTGCCAGCCAATACCACCGACCGTACTTACCAATGCCACACCCTGCAATGTCCGCCACAGCATTACTCCAAAAAGCTGCTCAAGTGGGCGCAGCGGCATCAAATGCGTCGTTGCTTCGTGGCTTAGGCTTAGTGTCATCTTCCTCTGCAGCTGCCCAGCAAGAGATCTTGGCATGGAACCACCAGAGGCGAGTCGAACCAGATGACGTATCATTCGCTGCAGGGCTCGGCCTCGGACTCCCCTGTGATGGGAACTCGGGATTGAAACAACTAACAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTGGATTTCCTTGGATTGGGAATGGCGGCTGGTGGAAGCCCCAACAGCGGCCTGGCCGCACTAATCACATCAATAGGCGGGAGTGTGGACGTTACAACCACAACCACCAGATCATACGGCGCTACTGACATATCCACCATAGACATGAACACAAATAATTGA 1491 51.71 MPVDLDSSSPASGEPTVSTPGNPASPPNSAVRKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRRRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCGKCSKKYGVQSDWKAHSKICGTHEYKCDCGTLFNRRDSFITHRAFCDVLAEERAKALLKPVGNSQTAVGKPNPEPSPPSPPPPSPLQSACEPTTVLAVPSQELPENPLQCIEEAAGMSGTSRSSSSSSSSSSNGSTRSSRFAGLFASSTTSMSLQPPRPYRDLMQAMACSDRSPDYASSSTIEPISLCLAMNQGPSMFGTASQYHRPYLPMPHPAMSATALLQKAAQVGAAASNASLLRGLGLVSSSSAAAQQEILAWNHQRRVEPDDVSFAAGLGLGLPCDGNSGLKQLTRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSIGGSVDVTTTTTRSYGATDISTIDMNTNN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2152878 2154694 + CmaCh07G004990.1 Cma07g00499 297814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00499 496 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Cma07g00499 496 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cma07g00499 496 MobiDBLite consensus disorder prediction 9 26 - -
Cma07g00499 496 Gene3D Classic Zinc Finger 41 111 - -
Cma07g00499 496 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Cma07g00499 496 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cma07g00499 496 MobiDBLite consensus disorder prediction 255 278 - -
Cma07g00499 496 MobiDBLite consensus disorder prediction 1 44 - -
Cma07g00499 496 SMART c2h2final6 137 162 IPR013087 -
Cma07g00499 496 SMART c2h2final6 61 83 IPR013087 -
Cma07g00499 496 SMART c2h2final6 102 132 IPR013087 -
Cma07g00499 496 MobiDBLite consensus disorder prediction 199 229 - -
Cma07g00499 496 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 488 - -
Cma07g00499 496 MobiDBLite consensus disorder prediction 210 227 - -
Cma07g00499 496 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 488 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00499 Cma-Chr7:2152878 Cma12g00483 Cma-Chr12:2520186 8.61E-122 dispersed
Cma07g00499 Cma-Chr7:2152878 Cma07g00501 Cma-Chr7:2157354 0 proximal
Cma01g01894 Cma-Chr1:12396752 Cma07g00499 Cma-Chr7:2152878 1.56E-138 wgd
Cma16g00651 Cma-Chr16:3386134 Cma07g00499 Cma-Chr7:2152878 3.30E-148 wgd
Cma03g00762 Cma-Chr3:5974951 Cma07g00499 Cma-Chr7:2152878 0 wgd
Cma07g00499 Cma-Chr7:2152878 Cma09g00169 Cma-Chr9:719687 3.45E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35368 PF00096 zf-C2H2 0.005 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00499 K25869 - csv:101217597 646.736