Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00501 ATGTCGGCCGATGTAGAAGATTCGTCTATAGCTTCCATAGAGGGTAGCGTTTCTTCTCCTGGAGCGAAATCTGCTACTAAGAAGAAGCGAAATCTTCCCGGAATGCCAGATCCGGAGGCAGAAGTAATAGCTTTGTCTCCGAAGACCCTTTTGGCCACGAATCGATTTGTTTGCGAGATTTGCAACAAGGGGTTTCAGAGGGATCAGAATCTGCAGCTTCACCGGCGAGGACACAATCTTCCATGGAAGCTCCGGCAGAGGTCAAGTAAGGAGGTCAAGAAGAAGGTCTATGTCTGCCCTGAGAGTTCATGTGTTCATCACGATCCCTCTAGAGCTCTCGGTGATCTGACTGGGATTAAAAAGCACTTTTGCAGAAAGCATGGCGAGAAGAAATGGAAATGCGATAAGTGTTCTAAAAAATACGCCGTTCAGTCCGATTGGAAAGCCCACTCCAAAATTTGTGGCACTCGCGAGTATAAATGCGATTGTGGGACTTTGTTTAACAGGAGGGATAGCTTCATTACACATAGAGCTTTCTGTGATGCATTGGCGGAGGAAAGGGCAAAAGCTCAGCTTAAGCCGGTGGACGAACCGGATTTGGATCCAGACATAGGCGATTCTCAAACGACGGTGGCGAAACCCAATCCGGAGCCTTCTCCACTATCGCCACCGCCTCCATCTCCGCAGTCAACGGGTGAGCCAACAACTGTGCTGCCTGTTCCAAATCAAGAGCTGCCAGAGATTCCCTTGCAATATATCGAAGAGGCACCGGGTATGGCGGCTACGAGCGGGAGCAGCAGCAGCAGCAGCAAGAGTGCGAGCAGCAATAGTAGCACGAGAAGTAGCGGATTTGCTGGCTTATTTGCTTCTTCAACTACGTCGATAAGCCTCCAACCTCCAAGACCTCCATTTACGAACCTAATGCAAGCCATGGCTTGTTCAGATCGTTCATCAGACTATGCACCATCTTCAACCATTGAACCTATTTCTCTATGTCTTGCAATGAATCAAGGGCCTCCGATGTTCGGAACCGCCAGCCAAGACCTCCGACCGTACGTACCAATGCCACACCCTGCAATGTCCGCTACAGCATTACTCCAAAGAGCTGCTCAAATGGGTGCAGCAGCATCAAGTGCGTCGTTGCTTCGTGGCTTGGGGTTAGTATCATCTTCCTCTTCAGCTGCTCAGCAAGAGAGCTTGCCATGGAACCACCAGAGACAAGTCGAACCAGATGGCGTCTCGATCGCTGCAGGGCTTGGCCTCGGACTCCCCTGCGATGGAAACTCGGGATTGAAGGAACTAATAAGGGGAAACCATTCCATGTTTGCTCCAAAACACACCACCCTTGATTTCCTTGGATTGGGAATGGCAGCTGGGGGCAGCCCCAACAGTGGCCTGGCTGCACTAATAACCTCAGTAGGCAGCAGCGTCGACGTCACAACAACCGCTCAATCATACCCAGGCGGCGGCAGCGGCGGAGACATATCAGGCCGCCAGGATATGAACAGAAGCAACTGA 1518 51.19 MSADVEDSSIASIEGSVSSPGAKSATKKKRNLPGMPDPEAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVKKKVYVCPESSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFNRRDSFITHRAFCDALAEERAKAQLKPVDEPDLDPDIGDSQTTVAKPNPEPSPLSPPPPSPQSTGEPTTVLPVPNQELPEIPLQYIEEAPGMAATSGSSSSSSKSASSNSSTRSSGFAGLFASSTTSISLQPPRPPFTNLMQAMACSDRSSDYAPSSTIEPISLCLAMNQGPPMFGTASQDLRPYVPMPHPAMSATALLQRAAQMGAAASSASLLRGLGLVSSSSSAAQQESLPWNHQRQVEPDGVSIAAGLGLGLPCDGNSGLKELIRGNHSMFAPKHTTLDFLGLGMAAGGSPNSGLAALITSVGSSVDVTTTAQSYPGGGSGGDISGRQDMNRSN 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2157354 2159395 + CmaCh07G005010.1 Cma07g00501 297816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00501 505 MobiDBLite consensus disorder prediction 258 282 - -
Cma07g00501 505 MobiDBLite consensus disorder prediction 1 25 - -
Cma07g00501 505 PANTHER ZINC FINGER PROTEIN GAI-ASSOCIATED FACTOR 1 1 498 - -
Cma07g00501 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 498 - -
Cma07g00501 505 MobiDBLite consensus disorder prediction 260 282 - -
Cma07g00501 505 Gene3D Classic Zinc Finger 35 106 - -
Cma07g00501 505 SUPERFAMILY beta-beta-alpha zinc fingers 55 152 IPR036236 -
Cma07g00501 505 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Cma07g00501 505 MobiDBLite consensus disorder prediction 481 505 - -
Cma07g00501 505 MobiDBLite consensus disorder prediction 191 241 - -
Cma07g00501 505 MobiDBLite consensus disorder prediction 216 232 - -
Cma07g00501 505 Pfam Zinc finger, C2H2 type 56 78 IPR013087 -
Cma07g00501 505 Gene3D Classic Zinc Finger 125 191 - -
Cma07g00501 505 SMART c2h2final6 97 127 IPR013087 -
Cma07g00501 505 SMART c2h2final6 132 152 IPR013087 -
Cma07g00501 505 SMART c2h2final6 56 78 IPR013087 -
Cma07g00501 505 MobiDBLite consensus disorder prediction 1 39 - -
Cma07g00501 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00501 Cma16g00651 CCT
Cma07g00501 Cma16g00651 ECH
Cma03g00762 Cma07g00501 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00762 Cma-Chr3:5974951 Cma07g00501 Cma-Chr7:2157354 0 dispersed
Cma03g00765 Cma-Chr3:5980960 Cma07g00501 Cma-Chr7:2157354 0 dispersed
Cma07g00501 Cma-Chr7:2157354 Cma16g00651 Cma-Chr16:3386134 1.45E-144 dispersed
Cma07g00499 Cma-Chr7:2152878 Cma07g00501 Cma-Chr7:2157354 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35369 PF00096 zf-C2H2 0.0051 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00501 K25869 - csv:101217597 631.328