Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00503 ATGGCGGCGGAACACGAAGAACACTCATTCAAGACAATCGGTACTGCTTTCAGTCGGTTCATTGGGGACGATGATTCTCAAGATTTTGGTTCCGAGTGCGCCCTCAAGATCGAATCTAGTTTGCTCATTGACCTTCGTTGTTTAAAGATTGGTGAAGTTATTGGCGAAGGTTCATACTCCATTGTGTATGAAGGACTATACGATTATCAGCCTGTTGCCGTGAAGATTATACAGCCGAGTAGGACATCGGCTATAAGTACTAAAAACAAAGAAAGATTTCTGAGAGAGGTTGCGTTGCTATCAATAGTGAATCACGAGAACGTTGTTCAGTTCATTGGCGCTGCCACAGAGCCGACGTTGATGATAATCACTGAGCTAATGAGAGGTGGATCACTCCAAAAGTACTTGTGGAGCATACGGCCGGAGACCCCAGAACTGAAGCTTTCCTTAAGTTTGGCCCTAGATCTATCACGAGTAATGGCATACTTACATTCAAATGGAGTCATTCATCGCGACATAAAGCCAAGCAATCTATTGCTAACAGAAGACAAGCAACGGATTAAACTAGCAGACTTTGGGTTGGCTAGAGAGGAAATATCTGGTGAAATGACTACTGAGGCGGGTACTTACCGATGGATGGCCCCTGAGCTGTTTAGCATTGATCCATTGCCTGTTGGAGGTAGGAAATGTTATGATCACAAGGCAGATGTCTACAGCTTCTCGATAATTCTTTGGGAGTTGATGACAAACAAGACTCCATTCAAGGGCAGAAACAATATAATGGTGGCATATGCCGCAGCCAAGAACATAAGACCAAGTCTTGAGGGAATCCCAGAAGATATCGCCCGTCTCTTGCAGTCATGCTGGGCTGAGGATCCAAAAATCCGTCCAGAATTTACACAAGTCATAGATTCTCTAAGGAATATTCTCCAAACTTGTTGCTTACAAGAATCTTCAGTTCCTGTCATGGCGGACACAGAGGAGGAGGTCGAAGGTGCATCAGACACATCGTTATCCTATAAGGACACCGTCACACCGGATCCCCATCTCTCCGTTTTACACGCGCAGCCTTCTTCGTCGGCAGAGGCGGTTCCAGTGGTGGCGCCATTCTCTTCCTCCGCCGTGACTTCATCTTCATTCCGCCCGTGTCCGCCGCCGGGCGGGTTCCGACACACTCGCCCTCATCCACGCGGAGAAGAGGGCACGCCTTCTAAAACTTCCAAACCTCCCTCTTCATCTCAGGAAATACCCCCGACGCCTTCATATCCTGATTGGTCAAGCTCAATGCAGGCTTACTATGGTGCTGGTGCTACTCCTCCTCCTTTCTTTGCATCTACTGTTGCTTCTCCAACTCCCCACCCTTACCTTTGGGGAAGTCAGCATCCTTTGATGCCACCTTATGGAACTCCAGTACCTTATCCAGCTATGTATCCTCCTGGGGGAGTTTATGCACATCCCAATATCACTGTGCCTCCTGGCTCTGCCCCAATTAATGCGGAATATGAAGGAAAATCTCCTGATGGAAAAGAAAGGGCATCCAAGAAATCCAAAGGTACATCGGGAAATACTGGTTCAGGTGGCGGTAGGACCGGGGAGAGAGGAAAGGTGGCTTCAAGTTCTGGAAATGATGGTGCATCTCAAAGTGAAAGTGGTACGGAGGGCTCATCAGAAGGCAGTGATGAGAATGCTAACCAACAGGAATTTGCTGCGAATAAGAAGGGCAGCTTCAACCAGATGCTGGCTGATGGAGCCAATGCACAAAGTAACACGGGTGGACCAAATTCCAAATCTTCAGTGACTGGGAAACCCATCACTTCCATTCCTGCAACTAATCTGAACATGGGAATGGATTTGTGGAATACCACCACTGCTGCCTCAGGGGCTGCAAAAGCAAGAGCAAACGCAGTCTCCTCAGCTATTGTTCCAGCAACGATGATTGGTCGTGACGGTGTGATGCCTGAACAATGGGCTCAAGATGAACGAGAGCTAAAACGACAGAAAAGGAAGCAATCTAACCGAGAGTCTGCTAGGAGGTCAAGATTACGTAAGCAGGCGGAGTGTGAAGAATTACAGGCCAGAGTGCAGACACTGAACAACGAGAACCGTACTCTCAGGGATGAGCTGCAGAGACTCTCCGAGGAATGTGAAAAGCTAACATCAGAAAATAGTTCCATCAAGGAAGAATTGACACGATTTTGTGGACCGGAGGCATTAGCTAAATTTGAGAAAGGAACTGCTGCTACTCCGGCTGCCCAGTCGCACGGTGGTGACGAGGGTAACAACTAA 2286 47.94 MAAEHEEHSFKTIGTAFSRFIGDDDSQDFGSECALKIESSLLIDLRCLKIGEVIGEGSYSIVYEGLYDYQPVAVKIIQPSRTSAISTKNKERFLREVALLSIVNHENVVQFIGAATEPTLMIITELMRGGSLQKYLWSIRPETPELKLSLSLALDLSRVMAYLHSNGVIHRDIKPSNLLLTEDKQRIKLADFGLAREEISGEMTTEAGTYRWMAPELFSIDPLPVGGRKCYDHKADVYSFSIILWELMTNKTPFKGRNNIMVAYAAAKNIRPSLEGIPEDIARLLQSCWAEDPKIRPEFTQVIDSLRNILQTCCLQESSVPVMADTEEEVEGASDTSLSYKDTVTPDPHLSVLHAQPSSSAEAVPVVAPFSSSAVTSSSFRPCPPPGGFRHTRPHPRGEEGTPSKTSKPPSSSQEIPPTPSYPDWSSSMQAYYGAGATPPPFFASTVASPTPHPYLWGSQHPLMPPYGTPVPYPAMYPPGGVYAHPNITVPPGSAPINAEYEGKSPDGKERASKKSKGTSGNTGSGGGRTGERGKVASSSGNDGASQSESGTEGSSEGSDENANQQEFAANKKGSFNQMLADGANAQSNTGGPNSKSSVTGKPITSIPATNLNMGMDLWNTTTAASGAAKARANAVSSAIVPATMIGRDGVMPEQWAQDERELKRQKRKQSNRESARRSRLRKQAECEELQARVQTLNNENRTLRDELQRLSEECEKLTSENSSIKEELTRFCGPEALAKFEKGTAATPAAQSHGGDEGNN 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2163688 2173256 - CmaCh07G005030.1 Cma07g00503 297818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00503 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Cma07g00503 761 MobiDBLite consensus disorder prediction 652 685 - -
Cma07g00503 761 MobiDBLite consensus disorder prediction 375 424 - -
Cma07g00503 761 Gene3D Phosphorylase Kinase; domain 1 36 128 - -
Cma07g00503 761 Pfam bZIP transcription factor 660 722 IPR004827 GO:0003700|GO:0006355
Cma07g00503 761 Gene3D - 663 720 - -
Cma07g00503 761 PANTHER G-BOX-BINDING FACTOR 1 398 756 - -
Cma07g00503 761 Pfam G-box binding protein MFMR 399 488 IPR012900 -
Cma07g00503 761 ProSiteProfiles Protein kinase domain profile. 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00503 761 SMART brlzneu 660 724 IPR004827 GO:0003700|GO:0006355
Cma07g00503 761 MobiDBLite consensus disorder prediction 326 356 - -
Cma07g00503 761 SMART serkin_6 48 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00503 761 CDD STKc_MAP3K-like 54 306 - -
Cma07g00503 761 MobiDBLite consensus disorder prediction 494 613 - -
Cma07g00503 761 Pfam Protein tyrosine and serine/threonine kinase 48 306 IPR001245 GO:0004672|GO:0006468
Cma07g00503 761 MobiDBLite consensus disorder prediction 535 613 - -
Cma07g00503 761 SUPERFAMILY Protein kinase-like (PK-like) 41 322 IPR011009 -
Cma07g00503 761 PANTHER G-BOX-BINDING FACTOR 3-RELATED 398 756 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma07g00503 761 MobiDBLite consensus disorder prediction 654 669 - -
Cma07g00503 761 Coils Coil 673 728 - -
Cma07g00503 761 MobiDBLite consensus disorder prediction 404 424 - -
Cma07g00503 761 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 662 725 IPR004827 GO:0003700|GO:0006355
Cma07g00503 761 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 667 682 IPR004827 GO:0003700|GO:0006355
Cma07g00503 761 SUPERFAMILY Leucine zipper domain 663 719 IPR046347 GO:0003700|GO:0006355
Cma07g00503 761 CDD bZIP_plant_GBF1 665 715 IPR045314 GO:0003700|GO:0006355
Cma07g00503 761 Gene3D Transferase(Phosphotransferase) domain 1 129 343 - -
Cma07g00503 761 ProSitePatterns Protein kinases ATP-binding region signature. 54 75 IPR017441 GO:0005524
Cma07g00503 761 PRINTS Tyrosine kinase catalytic domain signature 277 299 IPR001245 GO:0004672|GO:0006468
Cma07g00503 761 PRINTS Tyrosine kinase catalytic domain signature 162 180 IPR001245 GO:0004672|GO:0006468
Cma07g00503 761 PRINTS Tyrosine kinase catalytic domain signature 124 137 IPR001245 GO:0004672|GO:0006468
Cma07g00503 761 PRINTS Tyrosine kinase catalytic domain signature 235 257 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00768 Cma07g00503 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01640 Cma-Chr2:9295412 Cma07g00503 Cma-Chr7:2163688 3.31E-56 dispersed
Cma06g00624 Cma-Chr6:3042042 Cma07g00503 Cma-Chr7:2163688 1.81E-62 dispersed
Cma07g00503 Cma-Chr7:2163688 Cma10g00092 Cma-Chr10:373193 6.72E-100 dispersed
Cma03g00768 Cma-Chr3:5987278 Cma07g00503 Cma-Chr7:2163688 1.98E-180 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35370 PF07714 PK_Tyr_Ser-Thr 7.00E-55 CL0016 Cma TF
68686 PF07714 PK_Tyr_Ser-Thr 7.00E-55 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00503 K09060 - cmax:111496797 663.685