Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00504 ATGGCCACCGCCGCCGACGACAATACATTACTCATCTCGAATCTCTACAGCCCTGGAGTTTATACCCAAATACTCTCCCAACAAGGTGTGGCGGAGGGAAATAAGCCGATGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGGCCGGGGTGGCGGGGTTGAAAAAGAGGAAGCTGAGTACGGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCGTCTGGTTTCAAAACCGCCGTGCACGGTGGAAGAACAAGAAGCTCGAAGAGGAATATTCCACTCTCAAGAAAGCTCACGATTCCATTCTTCTCCAAAATTCCCACCTTGAATCTGAGATGGTGAAACTGAACGAGCAATTGAGAGAGGCGAAGAACGAGATCCAACGGTTGGTAGAAGGAAGTGAGAAGATTTGGAGCAATAGCCCGACGTCATCGGAGACGATGGACACCGTGCCACCGCTGGCGCCATCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATGTAA 651 49.62 MATAADDNTLLISNLYSPGVYTQILSQQGVAEGNKPMKRRRRRSKAKEAAGVAGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMVKLNEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDTVPPLAPSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2173580 2174910 - CmaCh07G005040.1 Cma07g00504 297819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00504 216 Coils Coil 103 162 - -
Cma07g00504 216 SMART HOX_1 54 115 IPR001356 GO:0003677
Cma07g00504 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cma07g00504 216 Gene3D - 53 120 - -
Cma07g00504 216 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Cma07g00504 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Cma07g00504 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cma07g00504 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cma07g00504 216 ProSiteProfiles 'Homeobox' domain profile. 56 111 IPR001356 GO:0003677
Cma07g00504 216 CDD homeodomain 56 112 IPR001356 GO:0003677
Cma07g00504 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 5 215 - -
Cma07g00504 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 5 215 IPR045224 GO:0003700
Cma07g00504 216 MobiDBLite consensus disorder prediction 30 55 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00769 Cma07g00504 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00504 Cma-Chr7:2173580 Cma16g00728 Cma-Chr16:3829042 1.17E-27 dispersed
Cma03g00769 Cma-Chr3:5995766 Cma07g00504 Cma-Chr7:2173580 1.75E-89 wgd
Cma04g00773 Cma-Chr4:3938724 Cma07g00504 Cma-Chr7:2173580 8.28E-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35371 PF00046 Homeodomain 1.30E-16 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00504 K09338 - csv:101216890 296.975