Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00504 | ATGGCCACCGCCGCCGACGACAATACATTACTCATCTCGAATCTCTACAGCCCTGGAGTTTATACCCAAATACTCTCCCAACAAGGTGTGGCGGAGGGAAATAAGCCGATGAAGCGGAGGCGGCGGAGGAGCAAAGCGAAGGAGGCGGCCGGGGTGGCGGGGTTGAAAAAGAGGAAGCTGAGTACGGAGCAAGTGAAACTTTTAGAGATGAATTTTGGGGATGAACACAAATTGGAATCGGAGAGGAAAGATCGGTTGGCTTCTGAATTGGGACTTGATCCACGACAAGTCGCCGTCTGGTTTCAAAACCGCCGTGCACGGTGGAAGAACAAGAAGCTCGAAGAGGAATATTCCACTCTCAAGAAAGCTCACGATTCCATTCTTCTCCAAAATTCCCACCTTGAATCTGAGATGGTGAAACTGAACGAGCAATTGAGAGAGGCGAAGAACGAGATCCAACGGTTGGTAGAAGGAAGTGAGAAGATTTGGAGCAATAGCCCGACGTCATCGGAGACGATGGACACCGTGCCACCGCTGGCGCCATCGTGGGGAGAGCTGTTCTTGGGAGAATATGAAGATGTATTCTATTGCATGCAACAGCAACACGGCAATTACAGTCAAGGAATGGAGTGGCTTAATCTTTATATGTAA | 651 | 49.62 | MATAADDNTLLISNLYSPGVYTQILSQQGVAEGNKPMKRRRRRSKAKEAAGVAGLKKRKLSTEQVKLLEMNFGDEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKAHDSILLQNSHLESEMVKLNEQLREAKNEIQRLVEGSEKIWSNSPTSSETMDTVPPLAPSWGELFLGEYEDVFYCMQQQHGNYSQGMEWLNLYM | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2173580 | 2174910 | - | CmaCh07G005040.1 | Cma07g00504 | 297819 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00504 | 216 | Coils | Coil | 103 | 162 | - | - | |
Cma07g00504 | 216 | SMART | HOX_1 | 54 | 115 | IPR001356 | GO:0003677 | |
Cma07g00504 | 216 | ProSitePatterns | 'Homeobox' domain signature. | 86 | 109 | IPR017970 | GO:0000981|GO:0006355 | |
Cma07g00504 | 216 | Gene3D | - | 53 | 120 | - | - | |
Cma07g00504 | 216 | SUPERFAMILY | Homeodomain-like | 56 | 120 | IPR009057 | - | |
Cma07g00504 | 216 | Pfam | Homeodomain | 57 | 110 | IPR001356 | GO:0003677 | |
Cma07g00504 | 216 | PRINTS | Lambda-repressor HTH signature | 82 | 91 | IPR000047 | GO:0003677 | |
Cma07g00504 | 216 | PRINTS | Lambda-repressor HTH signature | 91 | 107 | IPR000047 | GO:0003677 | |
Cma07g00504 | 216 | ProSiteProfiles | 'Homeobox' domain profile. | 56 | 111 | IPR001356 | GO:0003677 | |
Cma07g00504 | 216 | CDD | homeodomain | 56 | 112 | IPR001356 | GO:0003677 | |
Cma07g00504 | 216 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE | 5 | 215 | - | - | |
Cma07g00504 | 216 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 5 | 215 | IPR045224 | GO:0003700 | |
Cma07g00504 | 216 | MobiDBLite | consensus disorder prediction | 30 | 55 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g00769 | Cma07g00504 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00504 | Cma-Chr7:2173580 | Cma16g00728 | Cma-Chr16:3829042 | 1.17E-27 | dispersed | |
Cma03g00769 | Cma-Chr3:5995766 | Cma07g00504 | Cma-Chr7:2173580 | 1.75E-89 | wgd | |
Cma04g00773 | Cma-Chr4:3938724 | Cma07g00504 | Cma-Chr7:2173580 | 8.28E-60 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35371 | PF00046 | Homeodomain | 1.30E-16 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00504 | K09338 | - | csv:101216890 | 296.975 |