Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00506 ATGACAGCCCAAGAATCCAAAACCAATGTTGCTTTACTGGTCAGCCCCGGCATAGGCCACCTCATTCCCTTCCTTGAGCTAGCCCACCGCCTCGTCCACTACCACAACCTCCAGGCCACCCTCTTCGTCGTTTGCTCTAGCACCTCCGCCGCCGAGTCACACCTCCTCCAAAAATCCTCTGCCGTCAACATCGTGCCCCTTCGCCCCACCGTCAGTCTCGACCCAAATGCCAATTTCATCGACAAAATCAAGGCCATAATGTCCGCCTCATCCCCACTCCTTCGGCGCTCCCTCTCCGCTGCCCAGCCCCTCCCGGCGGCGCTGATTGTCGACCTTTTTGGAACATGGGCTCTTGCCATAGCCCACGAACTCGGCATGTTAGGGTTCGTTTTCATGACCACTAGTGCTTGGTTCCTTTCGCTTGCCATGTTTTTTCCCACCATGGACAAGCAAATGATCGACGACCACGTGTACAGCCATGAGCCGCTGAGAATCCCGGGTTGCAGCCCGGTCCGGTTCGAGAATACCGTCTCGGTGTTCGAGGAGGATGATTACGAGGGCTTTTTTGGAATTATGGCGAGGGAGCTTGGAACGGCTGATGGGATTTTGTCGAACACGTGGCAGGATCTGGAGCCCACAACCATAAAAGCGCTAACTGAAATTGAGACTCTCACCTATGGGAAAGTTAAAGGCGTCCCGATTTATCCAATTGGGCCGTTGACTAAATGCTGTGAGCCCAATTTGGAGAGCGAGGTGCTGAAGTGGCTCGACAGGCAACCGGATGAGTCGGTGATATATGTGTCGTTTGGAAGTGGGGGGACGTTGAGTGAAGAACAAATCAAGGAATTGGCGTGGGGGTTGGAGCTGAGTCAGCAGCGGTTCGTTTGGGTGATACGGCCGCCAGTGGATACCGATTCCTCGGGGACATTTTTCACAGCAGGGAACGAATCGGGGGACCACAAGTGGCCGCCGGAATACCTCCCGGAAGGATTTGTAAACAGGACGAAAGAGGTGGGTTTGCTTGTTCCGATATGGGGACCACAGGCAGAGATTTTGAGTCACCGATCGGTAAGGGGATTTTTGACGCACACTGGTTGGAACTCGTCGTTAGAGAGCATAGTGAACGGAGTGGCGATGGTGACGTGGCCACTGTACGCAGCGCAAAAGATGAACGCGGCGGAGCTGACGGAGGAGGTGGGAGTGGGTGTAAGGGTGTCGGAGGGGTTGGTGAGTAGGGAGGAGATAGAGAGTAAGGTGAGGAAGATAATGGCGGAGGAGGATGAAGAAGGGCGGGAAATCAGAGAGAGGGTTAAGGCGCTTAAGCGTAGTGGGGAAAGGGCCGCCGCCAAGGGTGGGTCGTCGTATAATTCGCTGGCTGAGGTGGCTGCAGAATGTGACATTTTCCGCCGCCAGACACAGCTTAGGAGGGCCGCCGCCGCCTGA 1443 55.44 MTAQESKTNVALLVSPGIGHLIPFLELAHRLVHYHNLQATLFVVCSSTSAAESHLLQKSSAVNIVPLRPTVSLDPNANFIDKIKAIMSASSPLLRRSLSAAQPLPAALIVDLFGTWALAIAHELGMLGFVFMTTSAWFLSLAMFFPTMDKQMIDDHVYSHEPLRIPGCSPVRFENTVSVFEEDDYEGFFGIMARELGTADGILSNTWQDLEPTTIKALTEIETLTYGKVKGVPIYPIGPLTKCCEPNLESEVLKWLDRQPDESVIYVSFGSGGTLSEEQIKELAWGLELSQQRFVWVIRPPVDTDSSGTFFTAGNESGDHKWPPEYLPEGFVNRTKEVGLLVPIWGPQAEILSHRSVRGFLTHTGWNSSLESIVNGVAMVTWPLYAAQKMNAAELTEEVGVGVRVSEGLVSREEIESKVRKIMAEEDEEGREIRERVKALKRSGERAAAKGGSSYNSLAEVAAECDIFRRQTQLRRAAAA 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2191531 2192973 - CmaCh07G005060.1 Cma07g00506 297821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00506 480 Coils Coil 423 443 - -
Cma07g00506 480 Gene3D Glycogen Phosphorylase B; 250 449 - -
Cma07g00506 480 Gene3D Glycogen Phosphorylase B; 10 454 - -
Cma07g00506 480 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 249 426 IPR002213 GO:0008194
Cma07g00506 480 CDD GT1_Gtf-like 9 450 IPR002213 GO:0008194
Cma07g00506 480 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 3 467 - -
Cma07g00506 480 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 461 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00506 K12356 UGT72E; coniferyl-alcohol glucosyltransferase [EC:2.4.1.111] - csv:101215927 613.609
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00506 Cma-Chr7:2191531 Cma14g02096 Cma-Chr14:14504322 2.56E-118 dispersed
Cma07g00506 Cma-Chr7:2191531 Cma07g00507 Cma-Chr7:2195235 3.09E-40 tandem
Cma16g00664 Cma-Chr16:3464799 Cma07g00506 Cma-Chr7:2191531 4.51E-131 wgd
Cma04g00789 Cma-Chr4:4023786 Cma07g00506 Cma-Chr7:2191531 3.38E-130 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g923 Blo04g00928 . . Bda10g00120 Bpe15g00439 . . Bma15g01008 . . . Cma07g00506 . . . Cpe19g00794 Cpe10g00590 Bhi03g01262 . . . . . . Cla01g01883 . . . . . . . Cone12ag0758 Cone6ag1605 Cone9ag1529 Lsi01g00703 . . Cme08g00822 . . . . Bpe10g00105 . . . . Cmo03g00805 Cmo07g00505 . . . . . . . . . . . . . . . . . . . . Lsi07g00267 Csa06g03213 Chy02g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010742 0 2 0 0 0 1 0 1 1 1 1 1 1 1 1 2 1 2 2 1 1 2 1 2 2 1 1 2 1 0 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00506 Cma_Chr07 FPKM 0.188496 0.104 0.005944 0.066081 0.0 0.078397 0.120939 0.098972 0.125326 0.17674