Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00547 ATGAATCCTCCCACCTTCCCTATGGAATTTTCCGGCGATCCACTTTCGACGAATCTCACCGGAAGTGATGACCCGCGGATTCCGTTGCAGAACCTCTCGACGATCTCTTCCAGAATGGATGCCGTCCAAATCTTCCTATCCGAGAATATCGACAGAGAAATTCGCATCAGCAATCAACAGATGGATGCGGTTTCGTCTGAAATCGCCTCCGTAATCCAGCAGATCGTCGTCAACGGCGCCGCTCTTCTAGCCTGCGCGCAAGTGAAAACCTCGAATACGCCGGATTTGAAAGCCTCGACGAGTCGAACTCATTCGATTCCGGTTACAGAGAAATCAATGGTGGAGCTGAAGGTCGAGGGTGTAGATGAGATTACGAGAATCGAATCCGAGGATTTTGAAATGAATTGTGAATTAGTGGAGCTGGACGCGATGGAACTGCTAGCGGAGCACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGGGATGCGAATTTGCGGATGCACATGCGGGCCCATGGGAATCAATTCAAGACCCCTGAGGCGTTGGCCAAGCCGTTAGATGGTGTTGTCGTGGACCACAAGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGATGGCTGTGTAAGGAACAAAACGCACAACAAGTTTAGGCCGTTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGGTGCAACAAGAAGAATTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGGGAGTCGAAGTGGCGGTGTTCGTGTGGGACGACCTTTTCCCGTAAGGATAAGTTGTTCGGTCATATGACGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGATGGGAAAGGGAAAGCCACGGCGGCGGAGGCGGCGGCGACGCCGGAGATGGATGAAGATGGGGACAGTAATCGGATTTTGAAGGACGTTAATTTCCCAGACGCCTGGAATAGTCCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAGGAGGTGCTGGGATTCCCTCATAGTTTCGATTCGGAATCGGAATGGAAATTTTGTTCTGATTAG 1143 51.36 MNPPTFPMEFSGDPLSTNLTGSDDPRIPLQNLSTISSRMDAVQIFLSENIDREIRISNQQMDAVSSEIASVIQQIVVNGAALLACAQVKTSNTPDLKASTSRTHSIPVTEKSMVELKVEGVDEITRIESEDFEMNCELVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDGVVVDHKAKRTRFSCPYDGCVRNKTHNKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKNFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMTLFEGHMPAVADDDDGKGKATAAEAAATPEMDEDGDSNRILKDVNFPDAWNSPDDGSFESFLDGFGSIENHCLQEVLGFPHSFDSESEWKFCSD 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2360128 2361270 + CmaCh07G005470.1 Cma07g00547 297862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00547 380 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Cma07g00547 380 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 19 370 IPR044300 GO:0010044|GO:0010447
Cma07g00547 380 SUPERFAMILY beta-beta-alpha zinc fingers 149 175 IPR036236 -
Cma07g00547 380 MobiDBLite consensus disorder prediction 1 25 - -
Cma07g00547 380 MobiDBLite consensus disorder prediction 11 25 - -
Cma07g00547 380 Pfam Zinc-finger of C2H2 type 153 172 - -
Cma07g00547 380 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
Cma07g00547 380 SMART c2h2final6 268 292 IPR013087 -
Cma07g00547 380 SMART c2h2final6 152 174 IPR013087 -
Cma07g00547 380 SMART c2h2final6 240 262 IPR013087 -
Cma07g00547 380 SMART c2h2final6 202 235 IPR013087 -
Cma07g00547 380 Gene3D Classic Zinc Finger 228 297 - -
Cma07g00547 380 Gene3D Classic Zinc Finger 152 175 - -
Cma07g00547 380 MobiDBLite consensus disorder prediction 299 323 - -
Cma07g00547 380 PANTHER ZINC FINGER PROTEIN STOP1 HOMOLOG 19 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00917 Cma-Chr1:5565297 Cma07g00547 Cma-Chr7:2360128 2.10E-75 dispersed
Cma07g00547 Cma-Chr7:2360128 Cma13g00258 Cma-Chr13:2152325 4.99E-72 dispersed
Cma07g00547 Cma-Chr7:2360128 Cma09g01147 Cma-Chr9:6561937 5.51E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35374 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00547 - - cmax:111496804 757.673