Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00547 | ATGAATCCTCCCACCTTCCCTATGGAATTTTCCGGCGATCCACTTTCGACGAATCTCACCGGAAGTGATGACCCGCGGATTCCGTTGCAGAACCTCTCGACGATCTCTTCCAGAATGGATGCCGTCCAAATCTTCCTATCCGAGAATATCGACAGAGAAATTCGCATCAGCAATCAACAGATGGATGCGGTTTCGTCTGAAATCGCCTCCGTAATCCAGCAGATCGTCGTCAACGGCGCCGCTCTTCTAGCCTGCGCGCAAGTGAAAACCTCGAATACGCCGGATTTGAAAGCCTCGACGAGTCGAACTCATTCGATTCCGGTTACAGAGAAATCAATGGTGGAGCTGAAGGTCGAGGGTGTAGATGAGATTACGAGAATCGAATCCGAGGATTTTGAAATGAATTGTGAATTAGTGGAGCTGGACGCGATGGAACTGCTAGCGGAGCACATCCATTTCTGTGAAATCTGCGGGAAAGGGTTCAAGCGGGATGCGAATTTGCGGATGCACATGCGGGCCCATGGGAATCAATTCAAGACCCCTGAGGCGTTGGCCAAGCCGTTAGATGGTGTTGTCGTGGACCACAAGGCGAAGCGCACGCGGTTTTCGTGCCCTTACGATGGCTGTGTAAGGAACAAAACGCACAACAAGTTTAGGCCGTTGAAATCGTTGATTTGCGTCAAGAATCACTTCAAGCGGAGCCACTGCCCCAAGATGTTCTCCTGCAATCGGTGCAACAAGAAGAATTTCTCTGTAATGGCGGACTTGAAGAGCCACTTGAAGCACTGCGGGGAGTCGAAGTGGCGGTGTTCGTGTGGGACGACCTTTTCCCGTAAGGATAAGTTGTTCGGTCATATGACGCTGTTCGAAGGCCACATGCCGGCGGTGGCGGACGACGACGATGGGAAAGGGAAAGCCACGGCGGCGGAGGCGGCGGCGACGCCGGAGATGGATGAAGATGGGGACAGTAATCGGATTTTGAAGGACGTTAATTTCCCAGACGCCTGGAATAGTCCGGATGATGGATCTTTCGAATCGTTTCTTGATGGGTTTGGTTCGATTGAGAATCACTGTTTGCAGGAGGTGCTGGGATTCCCTCATAGTTTCGATTCGGAATCGGAATGGAAATTTTGTTCTGATTAG | 1143 | 51.36 | MNPPTFPMEFSGDPLSTNLTGSDDPRIPLQNLSTISSRMDAVQIFLSENIDREIRISNQQMDAVSSEIASVIQQIVVNGAALLACAQVKTSNTPDLKASTSRTHSIPVTEKSMVELKVEGVDEITRIESEDFEMNCELVELDAMELLAEHIHFCEICGKGFKRDANLRMHMRAHGNQFKTPEALAKPLDGVVVDHKAKRTRFSCPYDGCVRNKTHNKFRPLKSLICVKNHFKRSHCPKMFSCNRCNKKNFSVMADLKSHLKHCGESKWRCSCGTTFSRKDKLFGHMTLFEGHMPAVADDDDGKGKATAAEAAATPEMDEDGDSNRILKDVNFPDAWNSPDDGSFESFLDGFGSIENHCLQEVLGFPHSFDSESEWKFCSD | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2360128 | 2361270 | + | CmaCh07G005470.1 | Cma07g00547 | 297862 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00547 | 380 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 154 | 174 | IPR013087 | - | |
Cma07g00547 | 380 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 19 | 370 | IPR044300 | GO:0010044|GO:0010447 | |
Cma07g00547 | 380 | SUPERFAMILY | beta-beta-alpha zinc fingers | 149 | 175 | IPR036236 | - | |
Cma07g00547 | 380 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cma07g00547 | 380 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Cma07g00547 | 380 | Pfam | Zinc-finger of C2H2 type | 153 | 172 | - | - | |
Cma07g00547 | 380 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 152 | 179 | IPR013087 | - | |
Cma07g00547 | 380 | SMART | c2h2final6 | 268 | 292 | IPR013087 | - | |
Cma07g00547 | 380 | SMART | c2h2final6 | 152 | 174 | IPR013087 | - | |
Cma07g00547 | 380 | SMART | c2h2final6 | 240 | 262 | IPR013087 | - | |
Cma07g00547 | 380 | SMART | c2h2final6 | 202 | 235 | IPR013087 | - | |
Cma07g00547 | 380 | Gene3D | Classic Zinc Finger | 228 | 297 | - | - | |
Cma07g00547 | 380 | Gene3D | Classic Zinc Finger | 152 | 175 | - | - | |
Cma07g00547 | 380 | MobiDBLite | consensus disorder prediction | 299 | 323 | - | - | |
Cma07g00547 | 380 | PANTHER | ZINC FINGER PROTEIN STOP1 HOMOLOG | 19 | 370 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00917 | Cma-Chr1:5565297 | Cma07g00547 | Cma-Chr7:2360128 | 2.10E-75 | dispersed | |
Cma07g00547 | Cma-Chr7:2360128 | Cma13g00258 | Cma-Chr13:2152325 | 4.99E-72 | dispersed | |
Cma07g00547 | Cma-Chr7:2360128 | Cma09g01147 | Cma-Chr9:6561937 | 5.51E-80 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35374 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00547 | - | - | cmax:111496804 | 757.673 |