Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00562 | ATGGATTTCGAAGATCAAGATGACCACGACGACGACATGGACATGGCGGCGGCCGCGGCAGCGAGTTACGACCCTTTACAGGGTAACTCAGGTGGGCGAGTCAAAACCCCAAGCAGTACGGACCCAAGTGGACAGAGGAAACCCAAGTACAGAGAGTGCTTAAAGAATCACGCGGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTAGCATCTGGAGCTGAAGGAACTCTCGACGCTCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACGGATAACCTCAACGCCACCGCGGTTGGTGTTGGACTTGGAATCGCAGAGCCATTTCTATTGCCACACCCGAGTCAGTTCTCTCCTTACTACCGAACCCCAGCTGGGTACCTCCACGTGGCACCACACCACAGACCTCTAGCTCTCCCCTCCACCTCCGGCGGCGGCGGCGGTTGCACCCTGAGCAGGGAGGAGCAGGAGGACATGTCGAATCCGAGCGGTGGCGGGGGAGGGAGTAGCAGCTTAGGGAGGAAGAGATTTAGAACAAAGTTCACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGGTGGAGGATCCAAAAACACGACGAGGCGTTGGTGCAGCAGTTCTGTAACGAGACCGGAGTGAAGCGGCACGTGCTTAAAGTGTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAG | 741 | 56.14 | MDFEDQDDHDDDMDMAAAAAASYDPLQGNSGGRVKTPSSTDPSGQRKPKYRECLKNHAVGIGGHALDGCGEFLASGAEGTLDALKCAACNCHRNFHRKETDNLNATAVGVGLGIAEPFLLPHPSQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGGCTLSREEQEDMSNPSGGGGGSSSLGRKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEALVQQFCNETGVKRHVLKVWMHNNKNTLGKKP | 246 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2432332 | 2433072 | + | CmaCh07G005620.1 | Cma07g00562 | 297877 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00562 | 246 | MobiDBLite | consensus disorder prediction | 147 | 183 | - | - | |
| Cma07g00562 | 246 | Gene3D | - | 167 | 243 | - | - | |
| Cma07g00562 | 246 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 50 | 99 | IPR006456 | - | |
| Cma07g00562 | 246 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
| Cma07g00562 | 246 | TIGRFAM | ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain | 49 | 99 | IPR006456 | - | |
| Cma07g00562 | 246 | MobiDBLite | consensus disorder prediction | 29 | 44 | - | - | |
| Cma07g00562 | 246 | Pfam | ZF-HD protein dimerisation region | 49 | 100 | IPR006456 | - | |
| Cma07g00562 | 246 | SUPERFAMILY | Homeodomain-like | 168 | 244 | IPR009057 | - | |
| Cma07g00562 | 246 | MobiDBLite | consensus disorder prediction | 154 | 177 | - | - | |
| Cma07g00562 | 246 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 35 | 245 | - | - | |
| Cma07g00562 | 246 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 1 | 35 | 245 | - | - | |
| Cma07g00562 | 246 | TIGRFAM | homeo_ZF_HD: homeobox domain, ZF-HD class | 183 | 240 | IPR006455 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00485 | Cma-Chr7:2110438 | Cma07g00562 | Cma-Chr7:2432332 | 9.10E-53 | dispersed | |
| Cma07g00562 | Cma-Chr7:2432332 | Cma11g01027 | Cma-Chr11:5597756 | 8.98E-48 | dispersed | |
| Cma12g00219 | Cma-Chr12:1073873 | Cma07g00562 | Cma-Chr7:2432332 | 1.54E-45 | wgd | |
| Cma03g00832 | Cma-Chr3:6284164 | Cma07g00562 | Cma-Chr7:2432332 | 3.92E-128 | wgd | |
| Cma04g00837 | Cma-Chr4:4301472 | Cma07g00562 | Cma-Chr7:2432332 | 4.49E-65 | wgd | |
| Cma05g00527 | Cma-Chr5:2518379 | Cma07g00562 | Cma-Chr7:2432332 | 2.78E-67 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35376 | PF04770 | ZF-HD_dimer | 4.50E-29 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00562 | - | - | csv:101204784 | 382.874 |