Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00562 ATGGATTTCGAAGATCAAGATGACCACGACGACGACATGGACATGGCGGCGGCCGCGGCAGCGAGTTACGACCCTTTACAGGGTAACTCAGGTGGGCGAGTCAAAACCCCAAGCAGTACGGACCCAAGTGGACAGAGGAAACCCAAGTACAGAGAGTGCTTAAAGAATCACGCGGTTGGCATTGGAGGTCACGCCCTTGACGGCTGCGGCGAATTTCTAGCATCTGGAGCTGAAGGAACTCTCGACGCTCTTAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAGGAGACGGATAACCTCAACGCCACCGCGGTTGGTGTTGGACTTGGAATCGCAGAGCCATTTCTATTGCCACACCCGAGTCAGTTCTCTCCTTACTACCGAACCCCAGCTGGGTACCTCCACGTGGCACCACACCACAGACCTCTAGCTCTCCCCTCCACCTCCGGCGGCGGCGGCGGTTGCACCCTGAGCAGGGAGGAGCAGGAGGACATGTCGAATCCGAGCGGTGGCGGGGGAGGGAGTAGCAGCTTAGGGAGGAAGAGATTTAGAACAAAGTTCACACAAGAACAGAAGGACAGAATGCTGGGACTGGCGGAGACATTGGGGTGGAGGATCCAAAAACACGACGAGGCGTTGGTGCAGCAGTTCTGTAACGAGACCGGAGTGAAGCGGCACGTGCTTAAAGTGTGGATGCATAATAACAAGAACACTCTTGGTAAGAAACCCTAG 741 56.14 MDFEDQDDHDDDMDMAAAAAASYDPLQGNSGGRVKTPSSTDPSGQRKPKYRECLKNHAVGIGGHALDGCGEFLASGAEGTLDALKCAACNCHRNFHRKETDNLNATAVGVGLGIAEPFLLPHPSQFSPYYRTPAGYLHVAPHHRPLALPSTSGGGGGCTLSREEQEDMSNPSGGGGGSSSLGRKRFRTKFTQEQKDRMLGLAETLGWRIQKHDEALVQQFCNETGVKRHVLKVWMHNNKNTLGKKP 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2432332 2433072 + CmaCh07G005620.1 Cma07g00562 297877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00562 246 MobiDBLite consensus disorder prediction 147 183 - -
Cma07g00562 246 Gene3D - 167 243 - -
Cma07g00562 246 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 50 99 IPR006456 -
Cma07g00562 246 MobiDBLite consensus disorder prediction 1 48 - -
Cma07g00562 246 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Cma07g00562 246 MobiDBLite consensus disorder prediction 29 44 - -
Cma07g00562 246 Pfam ZF-HD protein dimerisation region 49 100 IPR006456 -
Cma07g00562 246 SUPERFAMILY Homeodomain-like 168 244 IPR009057 -
Cma07g00562 246 MobiDBLite consensus disorder prediction 154 177 - -
Cma07g00562 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 35 245 - -
Cma07g00562 246 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 35 245 - -
Cma07g00562 246 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 183 240 IPR006455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00562 - - - csv:101204784 382.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00485 Cma-Chr7:2110438 Cma07g00562 Cma-Chr7:2432332 9.10E-53 dispersed
Cma07g00562 Cma-Chr7:2432332 Cma11g01027 Cma-Chr11:5597756 8.98E-48 dispersed
Cma12g00219 Cma-Chr12:1073873 Cma07g00562 Cma-Chr7:2432332 1.54E-45 wgd
Cma03g00832 Cma-Chr3:6284164 Cma07g00562 Cma-Chr7:2432332 3.92E-128 wgd
Cma04g00837 Cma-Chr4:4301472 Cma07g00562 Cma-Chr7:2432332 4.49E-65 wgd
Cma05g00527 Cma-Chr5:2518379 Cma07g00562 Cma-Chr7:2432332 2.78E-67 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma04g01895 . 83 282 ZF-HD Transcription Factor Family AT2G02540 55.3 2.7e-51 199.9
Cma06g00008 . 68 262 ZF-HD Transcription Factor Family AT2G02540 51.2 2.1e-48 190.3
Cma05g00527 . 53 236 ZF-HD Transcription Factor Family AT4G24660 55.1 2.2e-50 196.4
Cma07g00562 . 47 242 ZF-HD Transcription Factor Family AT4G24660 52.6 1.2e-48 190.7
Cma04g02764 . 25 251 ZF-HD Transcription Factor Family AT5G39760 53.8 3.2e-50 196.4
Cma14g00594 . 30 258 ZF-HD Transcription Factor Family AT5G39760 56.6 7.1e-50 195.3
Cma15g00271 . 756 983 ZF-HD Transcription Factor Family AT5G39760 56.2 2.1e-49 193.7
Cma11g01027 . 31 264 ZF-HD Transcription Factor Family AT5G39760 64.1 1.1e-47 188.0
Cma03g00745 CST 11 211 ZF-HD Transcription Factor Family AT2G18350 52.2 3.1e-48 189.5
Cma04g02764 . 55 248 ZF-HD Transcription Factor Family AT1G69600 53.9 8.8e-50 194.5
Cma18g01152 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 6.3e-48 188.3
Cma14g00594 . 11 287 ZF-HD Transcription Factor Family AT5G15210 51.7 3.1e-51 199.5
Cma15g00271 . 757 977 ZF-HD Transcription Factor Family AT5G15210 55.9 1.1e-45 181.0
Cma11g01027 . 28 267 ZF-HD Transcription Factor Family AT5G15210 53.9 6.2e-44 175.3
Cma04g01895 . 80 285 ZF-HD Transcription Factor Family AT1G14440 55.2 4.8e-56 215.7
Cma06g00008 . 56 262 ZF-HD Transcription Factor Family AT1G14440 52.1 1.2e-51 201.1
Cma14g00594 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.8 1.3e-56 217.6
Cma04g02764 . 16 259 ZF-HD Transcription Factor Family AT3G28920 54.5 6.2e-56 215.3
Cma11g01027 . 23 255 ZF-HD Transcription Factor Family AT3G28920 59.2 1.6e-51 200.7
Cma15g00271 . 756 979 ZF-HD Transcription Factor Family AT3G28920 57.7 1.3e-50 197.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35376 PF04770 ZF-HD_dimer 4.50E-29 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00562 Cma_Chr07 FPKM 0.218623 0.202525 0.746536 1.100667 43.438812 41.781273 37.561691 0.38547 0.163337 0.086044