Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00564 ATGGCGGATAGCTTTTACTGTACAGAGAGTGTCAATACTTGCTTTGATGAGCTTGAATGTAATGCCACAAACAATGAGTTTGAGCGAATCGAGTGTTTTGGATCCGGGAATTCGATGGTCTCTGCGATTCAGAGTGAACAGAGGATAAGAGAAATGGTTGAGCAAGAGATTCAGCATTTGCCTAGACATGATTATCTTAAGAGATTGCGCTGTGGGGCATTGGATTCCAAGTTTAGGAGAGCCGCTATTGATTGGATTTCGAAGGCTCATGCCCATTACAGCTTTGGAGCTTTGAGTCTATGTCTATCTATGAACTACTTGGATCGTTTCCTCTCAGAATATCGCATGCCTATGGATAAAAGCTGGAGTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTGGCAGCCAAGATGGAGGAGACAGAAGTTCCTCTTCCCATTGATTTACAGGTTGAGGAACCCAAGTTCGTGTTCGAATCAAAAACCATTCAAAGAATGGAGCTGCTGGTTCTAAGCAGGTTGAAATGGAAGATGCGAGCCATTACTCCATTTTCTTTCATTGATTATTTCCTCACTAACATCACAGTTGAGCCGCACGAACCGAGGCTATCCTTATTCAAATCTTCACAGCTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAACCCTCTGAAATTGCTTTGGCTGTGGCTATGTCTGTTTCTGGAGTAGTTCAAGCAGCAGACATCAATAAAGCAATCCTTGCTTTTCCATACATGGAGAAAGAGAGAGTAATGAAATGTATTGAGCTGATAAGAGATTTTTCATTGATTAGTAATGTATATGGGGTTGGTGGTTCGGTTCCTCAGAGCCCTATTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTAAAAGCAGGGTCGTGCGGTAATTTTTCTTCTTCTTCTCATGACAGTCCAGACAGCAAGAGAAGGAGACTAGACAGACCATGA 993 42.5 MADSFYCTESVNTCFDELECNATNNEFERIECFGSGNSMVSAIQSEQRIREMVEQEIQHLPRHDYLKRLRCGALDSKFRRAAIDWISKAHAHYSFGALSLCLSMNYLDRFLSEYRMPMDKSWSVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFESKTIQRMELLVLSRLKWKMRAITPFSFIDYFLTNITVEPHEPRLSLFKSSQLILSTIKGIDFLEFKPSEIALAVAMSVSGVVQAADINKAILAFPYMEKERVMKCIELIRDFSLISNVYGVGGSVPQSPIGVLDAACLSYKTEELKAGSCGNFSSSSHDSPDSKRRRLDRP 330
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2439307 2441477 - CmaCh07G005640.1 Cma07g00564 297879
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00564 330 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Cma07g00564 330 SMART cyclin_7 84 172 IPR013763 -
Cma07g00564 330 Gene3D - 62 179 - -
Cma07g00564 330 PANTHER CYCLINS 42 327 IPR039361 -
Cma07g00564 330 PANTHER CYCLIN-D4-1-LIKE 42 327 - -
Cma07g00564 330 CDD CYCLIN 79 171 IPR013763 -
Cma07g00564 330 Pfam Cyclin, C-terminal domain 181 272 IPR004367 -
Cma07g00564 330 Pfam Cyclin, N-terminal domain 50 178 IPR006671 -
Cma07g00564 330 Gene3D - 50 266 - -
Cma07g00564 330 MobiDBLite consensus disorder prediction 307 330 - -
Cma07g00564 330 SUPERFAMILY Cyclin-like 39 178 IPR036915 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00440 Cma-Chr4:2248742 Cma07g00564 Cma-Chr7:2439307 2.54E-62 dispersed
Cma07g00564 Cma-Chr7:2439307 Cma16g00310 Cma-Chr16:1444756 5.99E-64 dispersed
Cma12g00214 Cma-Chr12:1052341 Cma07g00564 Cma-Chr7:2439307 1.34E-90 wgd
Cma03g00834 Cma-Chr3:6287640 Cma07g00564 Cma-Chr7:2439307 8.42E-165 wgd
Cma05g00530 Cma-Chr5:2535606 Cma07g00564 Cma-Chr7:2439307 6.44E-93 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00564 K18810 - csv:101209378 479.174