Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00564 | ATGGCGGATAGCTTTTACTGTACAGAGAGTGTCAATACTTGCTTTGATGAGCTTGAATGTAATGCCACAAACAATGAGTTTGAGCGAATCGAGTGTTTTGGATCCGGGAATTCGATGGTCTCTGCGATTCAGAGTGAACAGAGGATAAGAGAAATGGTTGAGCAAGAGATTCAGCATTTGCCTAGACATGATTATCTTAAGAGATTGCGCTGTGGGGCATTGGATTCCAAGTTTAGGAGAGCCGCTATTGATTGGATTTCGAAGGCTCATGCCCATTACAGCTTTGGAGCTTTGAGTCTATGTCTATCTATGAACTACTTGGATCGTTTCCTCTCAGAATATCGCATGCCTATGGATAAAAGCTGGAGTGTGCAGCTGCTGTCAGTAGCTTGTATGTCTCTGGCAGCCAAGATGGAGGAGACAGAAGTTCCTCTTCCCATTGATTTACAGGTTGAGGAACCCAAGTTCGTGTTCGAATCAAAAACCATTCAAAGAATGGAGCTGCTGGTTCTAAGCAGGTTGAAATGGAAGATGCGAGCCATTACTCCATTTTCTTTCATTGATTATTTCCTCACTAACATCACAGTTGAGCCGCACGAACCGAGGCTATCCTTATTCAAATCTTCACAGCTCATTCTGAGCACAATTAAAGGCATTGACTTCTTGGAATTCAAACCCTCTGAAATTGCTTTGGCTGTGGCTATGTCTGTTTCTGGAGTAGTTCAAGCAGCAGACATCAATAAAGCAATCCTTGCTTTTCCATACATGGAGAAAGAGAGAGTAATGAAATGTATTGAGCTGATAAGAGATTTTTCATTGATTAGTAATGTATATGGGGTTGGTGGTTCGGTTCCTCAGAGCCCTATTGGAGTGTTGGATGCAGCTTGTTTGAGTTACAAAACAGAGGAATTAAAAGCAGGGTCGTGCGGTAATTTTTCTTCTTCTTCTCATGACAGTCCAGACAGCAAGAGAAGGAGACTAGACAGACCATGA | 993 | 42.5 | MADSFYCTESVNTCFDELECNATNNEFERIECFGSGNSMVSAIQSEQRIREMVEQEIQHLPRHDYLKRLRCGALDSKFRRAAIDWISKAHAHYSFGALSLCLSMNYLDRFLSEYRMPMDKSWSVQLLSVACMSLAAKMEETEVPLPIDLQVEEPKFVFESKTIQRMELLVLSRLKWKMRAITPFSFIDYFLTNITVEPHEPRLSLFKSSQLILSTIKGIDFLEFKPSEIALAVAMSVSGVVQAADINKAILAFPYMEKERVMKCIELIRDFSLISNVYGVGGSVPQSPIGVLDAACLSYKTEELKAGSCGNFSSSSHDSPDSKRRRLDRP | 330 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2439307 | 2441477 | - | CmaCh07G005640.1 | Cma07g00564 | 297879 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00564 | 330 | ProSitePatterns | Cyclins signature. | 79 | 110 | IPR006671 | - | |
| Cma07g00564 | 330 | SMART | cyclin_7 | 84 | 172 | IPR013763 | - | |
| Cma07g00564 | 330 | Gene3D | - | 62 | 179 | - | - | |
| Cma07g00564 | 330 | PANTHER | CYCLINS | 42 | 327 | IPR039361 | - | |
| Cma07g00564 | 330 | PANTHER | CYCLIN-D4-1-LIKE | 42 | 327 | - | - | |
| Cma07g00564 | 330 | CDD | CYCLIN | 79 | 171 | IPR013763 | - | |
| Cma07g00564 | 330 | Pfam | Cyclin, C-terminal domain | 181 | 272 | IPR004367 | - | |
| Cma07g00564 | 330 | Pfam | Cyclin, N-terminal domain | 50 | 178 | IPR006671 | - | |
| Cma07g00564 | 330 | Gene3D | - | 50 | 266 | - | - | |
| Cma07g00564 | 330 | MobiDBLite | consensus disorder prediction | 307 | 330 | - | - | |
| Cma07g00564 | 330 | SUPERFAMILY | Cyclin-like | 39 | 178 | IPR036915 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00440 | Cma-Chr4:2248742 | Cma07g00564 | Cma-Chr7:2439307 | 2.54E-62 | dispersed | |
| Cma07g00564 | Cma-Chr7:2439307 | Cma16g00310 | Cma-Chr16:1444756 | 5.99E-64 | dispersed | |
| Cma12g00214 | Cma-Chr12:1052341 | Cma07g00564 | Cma-Chr7:2439307 | 1.34E-90 | wgd | |
| Cma03g00834 | Cma-Chr3:6287640 | Cma07g00564 | Cma-Chr7:2439307 | 8.42E-165 | wgd | |
| Cma05g00530 | Cma-Chr5:2535606 | Cma07g00564 | Cma-Chr7:2439307 | 6.44E-93 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00564 | K18810 | - | csv:101209378 | 479.174 |