Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00570 ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTTGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACGACCATCCCTTGAACTACAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATACTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGGTCAAGTACCATCTTCCAATAATAAGGCTATTGGGCAAAGGACCCATATTAGTAGAATCTATTGCAACCTTCCTATAA 546 44.14 MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNTDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKVKYHLPIIRLLGKGPILVESIATFL 181
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2477419 2481079 + CmaCh07G005700.1 Cma07g00570 297885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00570 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cma07g00570 181 Pfam K-box region 92 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00570 181 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 157 - -
Cma07g00570 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cma07g00570 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cma07g00570 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cma07g00570 181 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Cma07g00570 181 Coils Coil 94 114 - -
Cma07g00570 181 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Cma07g00570 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cma07g00570 181 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 157 - -
Cma07g00570 181 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Cma07g00570 181 ProSiteProfiles K-box domain profile. 87 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cma07g00570 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00570 Cma-Chr7:2477419 Cma12g00198 Cma-Chr12:922037 2.76E-57 dispersed
Cma03g00842 Cma-Chr3:6328471 Cma07g00570 Cma-Chr7:2477419 1.69E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35378 PF01486 K-box 1.80E-13 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00570 - - csv:101203152 282.337