Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00578 ATGGATGAAGACGACGGGGAAAAAAGTCTTCGCCGGAGCTTTGAAAATCCGCCACAAACTTACGAGGAAAGGTTAAAATTCAAAGGATCTTGCTCTTCAACTTTCTACGAAGTTCACCACGAGTTGAGGGAGCCATTGGCAACTCGTTTGCAGAGACACAATCGAAGCCCAACAGATAAGCGCCTCGTTGATAATCAATCAATGACTGGTAAAGCAGACAAGGTCTACGTTGCTATCGGGAATGATCTTCACGATGGATTCAAGACATTGGGGTGGACTCTTGGGAAATGGAAGTCTCAACCGATTTCAATTGTGATTCTTCACATCGCCTACACCAATTCCCAGGAATATGTCTACACTCCATTCGGAAAGCTCCCTGCGAGTTCTGTAAGTGAAGAGAAAGTGAAAGTTCTGAGAAAATATGAGCAGGAAAAGATCGATAAGCTACTTTCTAAATATGTAGATTTTTGTGGCAAGGTAAAAGCCGAAATACTCAAGGTTGAGAAATCTGATGAACCTATTCATAGGTTCCTTGTTGACTTGATTTCAGAATTGGGAATCACCAATTTAGTCATTGGTTTTACGTTTATGAAATCTTCATCTTGGAAATCAAAGAATGCAATTAGTGGATCATTTTACATTTACAGAAACAAGGCCAATTCTTGTGAGTTGTTTGTAATATGGGGAGGAAAACAGGTATTTCTCAGAGATGAAAGAATCATGGAAGATGATAAAGGTGTAAGGATCTCTAAAATCAGCACCAAGCATTCATTCAAAGACTGGCTGGGAAAGATGTTCGTGGAAGATCCAATCTATTCCACAGAGAGGATGTTGAGTCTCTCGTCTTCTTCACCAAGTAGTTCAAATTCCTTGAGTTCTCGAAATTATTGGGACAATAATATCCATGAACTAGAGAACTACTACAAGGAATTACTATCGTTGAATTTGCAGGAAGAAAAAGACTGCGAGCAGGATCAAGAGGATGTTCTTGAAACTTCAAGTTCAACCCAGTTCAATATTCTGGATCATCCTGATTCAGACATGAATACTGAGGAAAGCATTGAGCATCTAAGGACTAAAATAGAGGAAGCTCGCAAGACCATCCAGTTGATGAAAGATGAAGCAAAGGGTAGTGCTGAAAGGCAGGCTAAAGCAGAGTGGGCCATTAATCTTTGCAGTCAGCGGACTGAAGAGCTTGAAGCACAGATAAAAGAAGAGGTCACAATTAGGGAAGAGTTGCAGAAAGAATTAGACCCTGCCAAAGAATGCATTCTTGAAATAGTACGTGATATCGAGGAAAGCAAGAACAGATTAAGTCCACTTCTCGAACTTCAAGCTGAACTATCAAGGAAGCTCCAAATTTCCACTGCAGGAAAATCGCGTATCGAAGCTCAATTGGAGAAGACAGCGAAAACGAGGGAAGGGATGGTGAGAGAAATCGAGGAGCTGAGGAGACAAAGAGACATTCTTAACCGAAGAATTGAGTTCTGCAAAGAGAAAGATGCCATTGGAATGGCTGAAAGGTCGACTGAAGTGACTTGCAGTACAAGAGTTTACACGGCTGAAGAGATCAGATTAGCCACCGAGGGCTTTTCAGAACAAATGAGATTGAGTTCCCGGGTGTACAGAGGACGTATCAATCATAATTCAATTGCAATCCAAATGATCGACTCAGGAAATTGTCTGTCAGAAGAAGATTTTCAATCTAAGGTGGAGCTTTTAAGCCATATCCGTCACCCTCATCTGATTGCCATGATGGGATTCTGCTCCGAGCTCAAATGTATTGTCTTTGATTACATGCATAGTGGTAGCTTAAGTGACAGACTACTTCCAACCAACAAAAGATCCAGGAAAATACGCCGCCCTCTCATGTGGCATGACAGAATCCGTATAGCATCAGAGGTATGCTCGGGCCTGAGCTTCCTTCACCAGGCTCAACCTCAGCCCATTTCTCATGGCAACCTCACCCTCTCCAAAATTCTCCTGGACCAAAACCTTGTCGCCAAAGTCACTGGTTTTGGGCTTGCCGAATTGGATAAAGCTGGTGGCATTGAGTTGGACATCCGGGCTTTTGGGGCTCTGCTGCTACATCTGGTAACTGGGAGGAATTGGACAGGGCTGATTGAGAAGGCACTGACGATGGGAAAGGCTGGTATTGTCCAGATTTTAGACGATGAGGCTGGACAGTGGCCGTTGGACTTGGTTGATGGGTTAGTTGATCTGGCTTTGGGATGCGTAACCCCAAATGGTTTAAATTCAGAGCTTAACTTGGCGACAGCCATGGAGGAGATCGATGAGATCAAGGCGAAAGCAGATGATCTAGTGGGAAACGAAGGTGCAAATGCAACTAATGAGGATGTAGATGATGTGCCAAGAATCTTCATCTGTCCCATCTTGCAGGAAGTGATGAAGAACCCACATGTGGCAGCAGATGGGTTCTCCTACGAGTTAGAGGCCATAGAACAATGGATAATTGCAGGAAACGATACATCACCAATGACCAACTTGAGGTTACAGCATCCTTATCTCACCCCTAATCACACACTTCGCTCTCTCATTCAAGACTGGCAAAATGAGACCTCAAATCGTTACACTTTAGATTTAGCGACTGATAGTTGA 2619 43.22 MDEDDGEKSLRRSFENPPQTYEERLKFKGSCSSTFYEVHHELREPLATRLQRHNRSPTDKRLVDNQSMTGKADKVYVAIGNDLHDGFKTLGWTLGKWKSQPISIVILHIAYTNSQEYVYTPFGKLPASSVSEEKVKVLRKYEQEKIDKLLSKYVDFCGKVKAEILKVEKSDEPIHRFLVDLISELGITNLVIGFTFMKSSSWKSKNAISGSFYIYRNKANSCELFVIWGGKQVFLRDERIMEDDKGVRISKISTKHSFKDWLGKMFVEDPIYSTERMLSLSSSSPSSSNSLSSRNYWDNNIHELENYYKELLSLNLQEEKDCEQDQEDVLETSSSTQFNILDHPDSDMNTEESIEHLRTKIEEARKTIQLMKDEAKGSAERQAKAEWAINLCSQRTEELEAQIKEEVTIREELQKELDPAKECILEIVRDIEESKNRLSPLLELQAELSRKLQISTAGKSRIEAQLEKTAKTREGMVREIEELRRQRDILNRRIEFCKEKDAIGMAERSTEVTCSTRVYTAEEIRLATEGFSEQMRLSSRVYRGRINHNSIAIQMIDSGNCLSEEDFQSKVELLSHIRHPHLIAMMGFCSELKCIVFDYMHSGSLSDRLLPTNKRSRKIRRPLMWHDRIRIASEVCSGLSFLHQAQPQPISHGNLTLSKILLDQNLVAKVTGFGLAELDKAGGIELDIRAFGALLLHLVTGRNWTGLIEKALTMGKAGIVQILDDEAGQWPLDLVDGLVDLALGCVTPNGLNSELNLATAMEEIDEIKAKADDLVGNEGANATNEDVDDVPRIFICPILQEVMKNPHVAADGFSYELEAIEQWIIAGNDTSPMTNLRLQHPYLTPNHTLRSLIQDWQNETSNRYTLDLATDS 872
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2498914 2502596 - CmaCh07G005780.1 Cma07g00578 297893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00578 872 Coils Coil 354 381 - -
Cma07g00578 872 Coils Coil 466 500 - -
Cma07g00578 872 Coils Coil 757 777 - -
Cma07g00578 872 Gene3D Phosphorylase Kinase; domain 1 502 599 - -
Cma07g00578 872 MobiDBLite consensus disorder prediction 1 20 - -
Cma07g00578 872 CDD RING-Ubox_WDSUB1_like 794 835 - -
Cma07g00578 872 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 865 IPR013083 -
Cma07g00578 872 Gene3D Transferase(Phosphotransferase) domain 1 600 685 - -
Cma07g00578 872 Pfam U-box domain 790 861 IPR003613 GO:0004842|GO:0016567
Cma07g00578 872 PANTHER OS02G0152300 PROTEIN 71 859 - -
Cma07g00578 872 SUPERFAMILY Protein kinase-like (PK-like) 513 749 IPR011009 -
Cma07g00578 872 Pfam Protein tyrosine and serine/threonine kinase 541 677 IPR001245 GO:0004672|GO:0006468
Cma07g00578 872 ProSiteProfiles Protein kinase domain profile. 521 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00578 872 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 50-RELATED 71 859 - -
Cma07g00578 872 SUPERFAMILY RING/U-box 780 862 - -
Cma07g00578 872 ProSiteProfiles U-box domain profile. 789 863 IPR003613 GO:0004842|GO:0016567
Cma07g00578 872 Coils Coil 396 416 - -
Cma07g00578 872 SMART Ubox_2 793 856 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00578 Cma-Chr7:2498914 Cma17g00434 Cma-Chr17:2556606 5.84E-71 dispersed
Cma07g00578 Cma-Chr7:2498914 Cma14g02042 Cma-Chr14:14233727 1.45E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68689 PF07714 PK_Tyr_Ser-Thr 2.70E-18 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00578 - - cmos:111463274 1525.38