Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00583 | ATGGCGATATCAGACGACCGACAGAGGACCATGCCCACGCAACTGGACCGGATGACTGGGCAGCGTCTCGCTTACGCGGAGGCGGTTCTCTTAACCCAACCCACCAACCCGGACCTCAAAGGAGAGGTGGACGATAAGTACCAGTACTCGCAAGAGAATATGGATAACAGGGTGCATGGATGGGTGTCTAGGGACCCAAACGTGGGGTTCTGGATGGTCACGGCCAGTGATGAGTTTCGTTCGGGGGGGCCGGTCAAGCAAGAACTCACATCCCACGTTGGCCCCACAACTCTTACGGTGTTCAAGAGTAATCATTATGCGGGTAAGGATGCTTCGATGAGATTTAAGGAGGGAGAAGCATGGAAAAAGGTTTTGGGCCCGGTTTTCATTTATCTAAACTCGGACCCGACCGGCACTGAAACCCCGGGTTCACTATGGGAAGATGCTAAAAACCAGATGAGGATAGAGAGGGGGAAGTGGCCGTATGGGTTCGTTGAGTCGAAAGAATTTCCGAGCTCAGAGGAAAGAGGCAGTGTTAGTGGCCGATTACTGGTCCGAGATAGGTTCGTGGCCTTCCCTCGCTGTCCATGTCTAATTCTAATTATTTTATTAAAGAGTAAACGACATCGTTTTTTTTTTGGGCCAGATTCTGCGTTTATGGGCCTCGCAGCTCCCGGGGAAGTGGGGTCTTGGCAAACTGAAAGCAAGGGGTATCAATTCTGGACACGGGCGGATCAAGATGGAAATTTCTTCATTCAAAATATAAGGCCAGGAAACTACAATCTCTACGCATGGGTACCCGGCGTCATTGGCGATTACAAGTACGACGGCGACATCACCGTCACGGCGGCGAGTTCCACTAACCTGAGCGTGCTGATTTACGACCCTCCAAGACGAGGCCCAACTCTGTGGGAGATCAGCATCCCTGACCGGAAGGCAGCCGAGTACTACATACCGGATCCTGAACCCACCTTAATGAGCCACTTTTACAACACCACCAAAATTCAAACCCCAGATAAGTTCCGGCAGTACGGTATCTGGGCACGCTACGCTGATTTGTACCCTGATCAGGATCTGGTGTACAACGTTGACACGGATGACTACCGCCGCCATTGGTTTTACGCTCACGTAACCAGAGCCACTGGATCCGGGGACTACCAAGCCAACTACGTGGCAGATTGTGTTTCTAGTCATGGGGTGGTCGATGTCCGGTTCAACAACCCGTTGGCCAGACGACCTGCTTTCACGACCGGGTATTGGAACGCAGGAAGAGATAACGCAATAGCAAGACATGGCATTCATGGGCTGTATCGGTTATTCAACTTCGATGTTCCCAGATATTATTTGGTCGAAGGAGACAACGTAATCTATCTTACACAGGGAAGACATGCGGGTCCTTTCCAAGGAGTAATGTACGACCACATACGATTTGAAGGTGTAGAGAATCTTAGGAAGTCTATTCATTTCATATAA | 1473 | 50.51 | MAISDDRQRTMPTQLDRMTGQRLAYAEAVLLTQPTNPDLKGEVDDKYQYSQENMDNRVHGWVSRDPNVGFWMVTASDEFRSGGPVKQELTSHVGPTTLTVFKSNHYAGKDASMRFKEGEAWKKVLGPVFIYLNSDPTGTETPGSLWEDAKNQMRIERGKWPYGFVESKEFPSSEERGSVSGRLLVRDRFVAFPRCPCLILIILLKSKRHRFFFGPDSAFMGLAAPGEVGSWQTESKGYQFWTRADQDGNFFIQNIRPGNYNLYAWVPGVIGDYKYDGDITVTAASSTNLSVLIYDPPRRGPTLWEISIPDRKAAEYYIPDPEPTLMSHFYNTTKIQTPDKFRQYGIWARYADLYPDQDLVYNVDTDDYRRHWFYAHVTRATGSGDYQANYVADCVSSHGVVDVRFNNPLARRPAFTTGYWNAGRDNAIARHGIHGLYRLFNFDVPRYYLVEGDNVIYLTQGRHAGPFQGVMYDHIRFEGVENLRKSIHFI | 490 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 2520291 | 2522225 | - | CmaCh07G005830.1 | Cma07g00583 | 297898 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00583 | 490 | Pfam | Rhamnogalacturonate lyase family | 1 | 43 | IPR010325 | - | |
| Cma07g00583 | 490 | Pfam | Polysaccharide lyase family 4, domain II | 216 | 289 | IPR029413 | - | |
| Cma07g00583 | 490 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 480 | - | - | |
| Cma07g00583 | 490 | SUPERFAMILY | Galactose-binding domain-like | 300 | 478 | IPR008979 | - | |
| Cma07g00583 | 490 | Gene3D | - | 214 | 292 | - | - | |
| Cma07g00583 | 490 | SUPERFAMILY | Starch-binding domain-like | 233 | 292 | IPR013784 | GO:0030246 | |
| Cma07g00583 | 490 | CDD | RGL4_M | 175 | 292 | IPR029413 | - | |
| Cma07g00583 | 490 | SUPERFAMILY | Galactose mutarotase-like | 44 | 137 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
| Cma07g00583 | 490 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 1 | 480 | - | - | |
| Cma07g00583 | 490 | Gene3D | - | 11 | 145 | IPR014718 | GO:0030246 | |
| Cma07g00583 | 490 | Pfam | Polysaccharide lyase family 4, domain III | 302 | 476 | IPR029411 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00583 | Cma-Chr7:2520291 | Cma12g00212 | Cma-Chr12:1038153 | 3.69E-177 | dispersed | |
| Cma03g00853 | Cma-Chr3:6372866 | Cma07g00583 | Cma-Chr7:2520291 | 0 | wgd | |
| Cma04g00857 | Cma-Chr4:4387318 | Cma07g00583 | Cma-Chr7:2520291 | 5.08E-180 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00583 | K18195 | - | csv:101206696 | 688.337 |