Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00592 ATGGAGCTCACTCAGTATGGTTTCTTAGAGGAGTTATTAGCTTCAACGCCTTGGACCTCCTCCTCCTCCTCCTCCACCTATTCAAATGGGTTCAATGATTTCTTCCCAAATGGCTGCAATTTCAGTTCTTTTGATGAAATTCCCCAAATGGGTACCTCTATTTCACCCCATTTTCCCGGTTTCCAAACGCCTACTGACTTTTCTTTCGCCGACCAGCACCTCTACGGCAGTTTTCTTGAAGGGTTTGCATTGCCGGAGGTGGATTCTTCATCGTACACTAAGAACAACGAAACCCCACCATTTGTTTCGGTAGAGGAGATTAGTAATAAGAACAGTGGTTTCCCTCCGACGGCGATGGAGGAGGAGGAGGAAGAACTTGGTTTTATGGAGTGTGAAGCGGCACCAAATGTTTGCAAACAGGAAATGGAGGTAATGGGTGGGCGTGAAACTAATGATTCTAAAATGGGTGTGGCAGAATTGGGGAAAAGAAGAAGCAACAAGGCTAAGAAGCTTGATGGACAGCCTTCGAAGAATTTAATGGCGGAAAGAAGAAGAAGGAGACGGTTGAATGATCGGCTTTCAATGCTTAGAGCAATAGTTCCTAAAATAAGCAAGATGGATAGAACGTCTATTCTTGGAGACACGATCGATTACGTGAAAGAGCTGCTTGAAAGAATCAATAACTTGAAAGAAGAAGATTCAAATCATGCAAGTCTAAATGGGATCTCCAAGGAAAGGAAGTCCAATCAAGTTCTGTTCGACGTTGAAAGGAAAGAGAGGGAGACTCGGATCGGCATTTGCTGTACGACGAGGCCAGGATTATTGCTATCCACCGTCAACACATTAGAGGCATTGGGCCTAGAGATTCAGCAGTGTGTTATTAGCTGCTTCAATGATTTCTCAATGCAAGCTTCTTGTTCAGAGGGAAGTTCTCAGAAAGCAGTGCCAAGTTCTGATGATATAAAGGAGGCATTGTTCAGAAATGCAGGCTATGGAGGGAAGTGCTTGTAG 1011 44.31 MELTQYGFLEELLASTPWTSSSSSSTYSNGFNDFFPNGCNFSSFDEIPQMGTSISPHFPGFQTPTDFSFADQHLYGSFLEGFALPEVDSSSYTKNNETPPFVSVEEISNKNSGFPPTAMEEEEEELGFMECEAAPNVCKQEMEVMGGRETNDSKMGVAELGKRRSNKAKKLDGQPSKNLMAERRRRRRLNDRLSMLRAIVPKISKMDRTSILGDTIDYVKELLERINNLKEEDSNHASLNGISKERKSNQVLFDVERKERETRIGICCTTRPGLLLSTVNTLEALGLEIQQCVISCFNDFSMQASCSEGSSQKAVPSSDDIKEALFRNAGYGGKCL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2545979 2547524 + CmaCh07G005920.1 Cma07g00592 297907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00592 336 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 336 - -
Cma07g00592 336 PANTHER - 2 336 - -
Cma07g00592 336 Coils Coil 212 232 - -
Cma07g00592 336 SMART finulus 179 228 IPR011598 GO:0046983
Cma07g00592 336 Pfam Helix-loop-helix DNA-binding domain 179 222 IPR011598 GO:0046983
Cma07g00592 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 173 222 IPR011598 GO:0046983
Cma07g00592 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 234 IPR036638 GO:0046983
Cma07g00592 336 Gene3D - 174 245 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00592 Cma-Chr7:2545979 Cma09g00606 Cma-Chr9:2852285 2.40E-69 dispersed
Cma12g00174 Cma-Chr12:791251 Cma07g00592 Cma-Chr7:2545979 9.41E-66 wgd
Cma03g00858 Cma-Chr3:6395689 Cma07g00592 Cma-Chr7:2545979 0 wgd
Cma05g00563 Cma-Chr5:2765253 Cma07g00592 Cma-Chr7:2545979 5.09E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35379 PF00010 HLH 2.20E-09 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00592 - - cmax:111497242 639.417