Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00607 ATGCGTCTTCTTCCTCTTCTTCTCCTTTGTCTTCTGCAACTTCACATTCACCATTGTTGTTCAGCTCGTGTTTCTGAGTATCGAGCTCTGCTCTCGCTTAGAACCTCCATTTCTGGTGACCCCAAATCCTCGCTCTCTTCGTGGAATGCTTCCACCAGTCACTGTACTTGGTTTGGGGTTACTTGCGATGTTCGTCGCCATGTCACTGCCCTTGACCTCTCTGGTCTCGGACTTTCTGGTTCTCTTTCACCTGATGTTGCCTATTTGAGGTTTCTAACTAATCTTTCTCTTGCGTCCAATGATTTCTCTGGTCCAATCCCGCCGGAGATTTCTTCCATTTCTTCTCTTCGGTTCCTTAACCTGTCTAATAATGTCTTCGATGGGTCGTTCCCTACGCAGCTTTCGCAGCTTCGGAATCTGCAGGTTCTTGATTTGTATAACAACAATATGACTGGGGATTTCCCCATTGTCGTTACTGAAATGATGACCCTCCGCCATTTGCATTTGGGTGGAAATTTCTTCGCCGGAGCGATTCCGCCGGAAGTCGGTCGGATGGAGTCCTTGGAGTACTTTGCGGTTTCTGGTAACGAACTCGGCGGTTCCATACCGCCGGAAATCGGGAACTTGACGAATCTTCGTGAGCTTTACATTGGCTACTTCAACGCGTACGTCGGCGGGATTCCGGCTGAGATTGGGAATTTGTCGGAGTTGGTACGGTTGGACGCGGCCAACTGTGGACTCTCTGGTCGGATTCCGCCGGAGCTCGGAAAGCTGAAGAACCTGGATACGCTGTTTCTTCAAGTAAATGGTCTATCTGGGCCATTGACGCCGGAGATTGGAGAGTTGAATGGCTTGAAATCGTTGGATTTGTCGAACAATATGCTTGTGGGTGAGATTCCCAGCTCGTTCTCCGAGCTCAAGAACTTGACGCTGTTGAATCTGTTTAGAAACAAGCTTCATGGAGCGATTCCTTCCTTTATTGGGGACTTGCNAAAGCTGGAGGTGTTGCAGTTATGGGAGAATAATTTCACGGAAGCGATTCCACAGAACCTGGGCAAGAACGGAATGCTTCAGATTTTGGATCTTTCTTCCAACAAGCTCACCGGAAATCTTCCTCCCGATATGTGCTACGGTAATCGCCTTCAAACTCTCATCGCATTGAGCAATTTCTTGTTTGGTCCAATCCCAGAGTCGCTAGGCAAATGTGTTTCGCTTAATCGGATTCGTATGGGGGATAATTTTCTTAATGGATCTATCCCAAAGGGGCTTCTCAGTCTGCCGGACCTCTCTCAGGTCGAGTTACAGGACAATTACCTCTCCGGCGAGTTCCCTGTAACCGATTCAATCTCACTCAATCTGGGCCAGATTAGTCTCTCGAACAACCGCCTCTCCGGGTCGATTCCACCCACCATCGGCAACTTCTCCGGCGTCCAGAAACTGCTCCTCGACGGAAATAAATTCTCCGGTCAAATCCCACCTGAGATTGGGCGGTTACAGCAACTTTCAAAGATTGATTTCAGTAACAACAAGTTTTCAGGTCCAATCGCACCGGAGATTAGCCAATGCAAGCTGCTAACCTTCGTCGATCTCAGTCGGAACGAGCTCTCGGGTGAAATTCCAAACGAGATTACGAGTATGAGAATCTTGAATTACCTAAATCTTTCAAAAAACCATTTAATCGGTGGAATCCCATCTTCCATAGCCAGTATGCAGAGTTTGACCTCTGTGGATTTCTCATACAACAACCTCTCCGGCTTAGTTCCGGGAAGTGGGCAATTCAGCTACTTCAATTACACATCGTTCCTGGGCAATCCTGATCTCTGCGGCCCATATTTAGGACCATGCAAAGATGGGGTCGCCAATAGCAATTACCAACAACATGTAAAAGGTCCCTTCTCTGCTTCCCTCAAGCTCCTCCTTGTAATTGGTCTGCTTCTTTGCTCAATTGCATTTGCAGTGGCTGCAATCATCAAAGCTCGATCATTGAAGAGAGCCAGTGAGTCTCGGGCTTGGAAATTAACATCCTTCCAACGCCTAGATTTCACAGTTGATGATGTTCTTGATTGCTTGAAAGAGGACAACATCATTGGAAAAGGAGGTGCTGGAATTGTGTATAAAGGGGCGATGCCTAGTGGTGACCACGTCGCCGTCAAAAGACTGCCGGTGATGAGCCGAGGGTCTTCCCACGACCATGGATTCAACGCTGAGATACAAACTCTTGGGAGGATTCGACATAGACACATTGTTAGGCTATTGGGATTTTGTTCAAATCATGAGACAAATCTTTTGATTTATGAGTATATGCCTAATGGGAGCTTGGGGGAAGTTCTTCATGGGAAAAAAGGAGGTCACTTACAATGGGACACAAGGTATAAGATTGCCATTGAAGCTGCCAAAGGGCTTTGCTATCTCCATCATGATTGCTCGCCGCTCATTGTTCATCGAGATGTGAAATCAAATAACATACTTCTTGACACTAATTTCGAAGCTCATGTTGCTGATTTTGGCCTGGCCAAGTTCTTGCAGGATTCCGGCACTTCTGAGTGCATGTCTGCCATTGCTGGTTCTTATGGATATATTGCTCCAGAATACGCTTACACGCTGAAAGTTGACGAGAAGAGTGACGTGTATAGCTTTGGAGTTGTGCTCTTGGAGCTTGTTAGCGGAAGAAAACCAGTTGGAGAATTCGGGGACGGTGTTGACATAGTCCAATGGGTTAGAAAAATGACAGACTCAAACAAGGAAGAGGTAGTGAAAATCCTTGATCCAAGGCTCTCCTCCATCCCTCTCCATGAAGTGTCACACGTCTTCTACGTTGCAATGCTGTGCGTCGAAGAACAGGCGGTGGAGCGCCCGACGATGCGGGAAGTGATCCAAATCCTGTCGGAGGTCCCACAGCCACCATGTTCAAAACCAGGAGACTCAGCACTCCCAAACTCCTCACCACCACCACCAGCAGCGGCAGTAGCATTGGACCCTCCAACAACAGGAACCACGAACAAAAAGGACCAGCAGCCGCCACCGGATCTTCTTAGCATTTGA 3042 47.76 MRLLPLLLLCLLQLHIHHCCSARVSEYRALLSLRTSISGDPKSSLSSWNASTSHCTWFGVTCDVRRHVTALDLSGLGLSGSLSPDVAYLRFLTNLSLASNDFSGPIPPEISSISSLRFLNLSNNVFDGSFPTQLSQLRNLQVLDLYNNNMTGDFPIVVTEMMTLRHLHLGGNFFAGAIPPEVGRMESLEYFAVSGNELGGSIPPEIGNLTNLRELYIGYFNAYVGGIPAEIGNLSELVRLDAANCGLSGRIPPELGKLKNLDTLFLQVNGLSGPLTPEIGELNGLKSLDLSNNMLVGEIPSSFSELKNLTLLNLFRNKLHGAIPSFIGDLXKLEVLQLWENNFTEAIPQNLGKNGMLQILDLSSNKLTGNLPPDMCYGNRLQTLIALSNFLFGPIPESLGKCVSLNRIRMGDNFLNGSIPKGLLSLPDLSQVELQDNYLSGEFPVTDSISLNLGQISLSNNRLSGSIPPTIGNFSGVQKLLLDGNKFSGQIPPEIGRLQQLSKIDFSNNKFSGPIAPEISQCKLLTFVDLSRNELSGEIPNEITSMRILNYLNLSKNHLIGGIPSSIASMQSLTSVDFSYNNLSGLVPGSGQFSYFNYTSFLGNPDLCGPYLGPCKDGVANSNYQQHVKGPFSASLKLLLVIGLLLCSIAFAVAAIIKARSLKRASESRAWKLTSFQRLDFTVDDVLDCLKEDNIIGKGGAGIVYKGAMPSGDHVAVKRLPVMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLIYEYMPNGSLGEVLHGKKGGHLQWDTRYKIAIEAAKGLCYLHHDCSPLIVHRDVKSNNILLDTNFEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVSGRKPVGEFGDGVDIVQWVRKMTDSNKEEVVKILDPRLSSIPLHEVSHVFYVAMLCVEEQAVERPTMREVIQILSEVPQPPCSKPGDSALPNSSPPPPAAAVALDPPTTGTTNKKDQQPPPDLLSI 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2629596 2632943 + CmaCh07G006070.1 Cma07g00607 297922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00607 1013 Gene3D Ribonuclease Inhibitor 221 379 IPR032675 -
Cma07g00607 1013 SUPERFAMILY RNI-like 71 392 - -
Cma07g00607 1013 ProSiteProfiles Protein kinase domain profile. 690 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00607 1013 MobiDBLite consensus disorder prediction 993 1007 - -
Cma07g00607 1013 Pfam Leucine Rich Repeat 285 306 IPR001611 GO:0005515
Cma07g00607 1013 SUPERFAMILY Protein kinase-like (PK-like) 682 961 IPR011009 -
Cma07g00607 1013 MobiDBLite consensus disorder prediction 964 1013 - -
Cma07g00607 1013 SMART serkin_6 690 960 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00607 1013 Gene3D Ribonuclease Inhibitor 380 616 IPR032675 -
Cma07g00607 1013 Gene3D Ribonuclease Inhibitor 20 220 IPR032675 -
Cma07g00607 1013 SMART LRR_typ_2 330 354 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 570 593 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 282 306 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 355 378 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 185 209 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 113 137 IPR003591 -
Cma07g00607 1013 SMART LRR_typ_2 498 522 IPR003591 -
Cma07g00607 1013 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 6 998 - -
Cma07g00607 1013 Gene3D Phosphorylase Kinase; domain 1 655 767 - -
Cma07g00607 1013 Pfam Protein tyrosine and serine/threonine kinase 692 961 IPR001245 GO:0004672|GO:0006468
Cma07g00607 1013 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cma07g00607 1013 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 6 998 - -
Cma07g00607 1013 Gene3D Transferase(Phosphotransferase) domain 1 768 969 - -
Cma07g00607 1013 ProSitePatterns Serine/Threonine protein kinases active-site signature. 812 824 IPR008271 GO:0004672|GO:0006468
Cma07g00607 1013 SUPERFAMILY L domain-like 299 615 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01981 Cma-Chr1:12745016 Cma07g00607 Cma-Chr7:2629596 0 dispersed
Cma04g00853 Cma-Chr4:4374906 Cma07g00607 Cma-Chr7:2629596 1.54E-10 dispersed
Cma04g00900 Cma-Chr4:4686817 Cma07g00607 Cma-Chr7:2629596 0 dispersed
Cma07g00607 Cma-Chr7:2629596 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma19g00324 Cma-Chr19:3070943 Cma07g00607 Cma-Chr7:2629596 2.60E-154 dispersed
Cma07g00607 Cma-Chr7:2629596 Cma07g00610 Cma-Chr7:2635527 0 proximal
Cma03g00869 Cma-Chr3:6441830 Cma07g00607 Cma-Chr7:2629596 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68690 PF07714 PK_Tyr_Ser-Thr 2.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00607 - - cmos:111463083 1935.23