Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00610 ATGACAAACAGAAAGCATTCAAAATTTGTATGCAAAAAGATGAGATTTTTTGCCATTATTCTCCTTCTGCAGCTGCAAATTCTGCAACTTTACTTTTCCCCTGCCTTCTCTGCATCCCTGACTGAATCACAGGCCCTTCTCTCCTTCAAAAACTCCATCTCCGATGACCCTCGATCTTCTCTATCCTCCTGGAACGCCGACGTCGCCCCCTGTACCTGGGCTCGCGTCACATGCGACGTCCGTGGCCATGTCCTCGCCCTCCACCTCTCTTCTCTCGACCTTTCCGGCACCCTTTCTCCTCATCTTGCCTCTCTTCCATTTCTCACTAATGTTTCCTTCCAACTCAACAAATTCTCCGGCGGAATCCCCCCGGAGTTTGCCTCCATGTCTTCTCTCCGCCATCTTAATCTCTCTAGCAACCTCCTCAACGGCTCGATTCCTCGCGAGTTTTCGCAGCTGAAGAATCTACAAGTTCTCGATGTTTATAACAACAACATGACCGGCGTTTTCCCCAGAGTGGTCACTGAAATCCCCAATCTTCGCCATTTACACCTTGGGGGAAATTTCTTCTCCGGTCGAATCCCTCCGGAGATTGGACGCTTGCAGTTCTTGGAGTTTCTGGCGATTCATGGCAACGACCTTGAAGGTCCGATTCCGGCGACGATCGGAAACTTGACGAACCTTCGACAACTCTTCATTGGTTACTACAACACCTTCGTCGGTGGAATACCAGCGGCGATAGGAAACTTATCGGAGTTAGTTCTGTTAGATGCCGCGAGCTGTGGTTTGTCCGGAAAGTTCCCGCCGGAGCTCGGAAAGTTGCAGAAGCTCACTAAACTATTCCTTCAAGAAAATGCTCTGTCTGGATCATTAACAGACCTAGGAGGATTGAAGAACATACAATCATTGGATATATCATGCAATATGCTTGTTGGTGAAATACCCATCTCTTTTGCAGAGTTCAAGAACTTGACACTATTGCACCTTTTCGACAATAAGCTCTCCGGTGAGATTCCGGGATTCATGGGTGACCTCCCAAACTTAGAGATATTGCAATTATGGAACAATAATTTCACAGGTTCGATTCCTCGGAATTTGGGGAAGAACAGAATGCTTCTGATTCTCGATCTTGCTTTCAACCAGTTGACAGGCACAATTCCTTCTGAAATTTGCCATGGGAATCATCTTGAAGTTTTGATCCTTATGGGCAATTCCTTACATGGTTCCATCCCAGAATCGTTAGGAAATTGTCCATCACTTAGGCGTATACTTCTGTGGGGCAACGCTCTCAATGGATCAATTCCAAAGGGGCTATTGGGTTTGCCAAATCTCACTCAAATTGATTTGCACGACAATTTTCTCTCTGGAGAACTTCCCCTTACCGATTCAGTCTCTGTTAACCTTCTTCAGATTAGTTTATCCAACAATATGATATCTGGATCTTTGCCGCCCACCATCGGCAACCTTCTGGCTGTCCAGAAGCTTCTTCTTGATCGGAATAAGTTTTCCGGTGAGATTCCTTCGACGATTGGGAGATTACAGCAACTATCTCGGATAAATTTCAGCCAGAATAAATTCTCCGGTAGAATTGTGCCGGAGATAAGTGAGTGCAAGCACTTGATCTTCCTTGATCTTAGTGGAAATGAGCTTTCAGGTGAAATTCCTAATAATATTACCAACATGAAATTATTGACATACATGAATCTTTCAAGAAACCATTTGGTTGGGTCAATTCCTGCTTCCATAGTTCATATGCAGAGCTTAACTTCCGTGGATTTTTCATATAACAATCTCTCTGGTTTGGTTTTGGGAACTGGGCAATTTGGTTACTTCAATTACACATCATTTCTTGGCAACCCTTATCTCTGTGGAGCCTATTTAGGGCCTTGCAATCATCAAGAACATATGAAGCTCTCCCTCTCAACTCCTCTCAGGCTCCTCCTAGTTTTTGGATCTTTTTTCTGTTTATTTGCCTTGACTGTTGCTTTGATCTTCAAAGTTCGGTCATTGAGGAGAGCAAGGGAGTTTCAAGGATGGAGATTAACAGCCTTCCAACGCTTGGGTTTCTCGGTTGATGAGGTCTTGAATTGCCTTAAGAAGGAAAATGCTATTGCAAAAGGAGGTTATGGCACAGTATATGAAGGAGTGATGCCTAGTGGTGATCAGGTCACTGTGAAGAGACTTCCAAAGATGAGCGATGGGTGTTCTAATGACGACGGGTTCGATACCGAGATACAAGCTCTTGGGAGGATTCGACACCGTCACGTTGTTAGATTATTGGGTTTTTGTTCAAACCATGACACTGGTCTTTTGGTATATGAGTACATGCCTAATGGGAACCTCTATGAGGTTCTTCATGGCAAGAAAGGAGGCCACTTGCTTTGGGATACAAGGTACAAGATAGCCATTGGAATTGCGAATGGACTCTGCTACCTTCACCACCATTGCTCACCGCCGATCGTTCATCGAGATGTGAAATCGAACAACATTATGCTGGACACCAATTTTGATCCTCAGCTTGCCAATTCTGGGCTCGCGAAGTTCTTACAAGATTCGGGCGCATTGGATCGATCAGCTCTTGCACCAGAACATGTCGACGAGAAGTGGGATGTATATAGCTTTGGCGTCGTCCTCTTCGAACTTGTTAGCGATAGGAATCCAGTTGGTGAATTAAGTGACGGTGTGGACATAGTCGAATGGGTTAGAAAAATGACGAACTCAGAAGAGGAAGGAATACATAAAATGGTTGATCAAAGACTCTCTTGTGTCCCCCTCGACGAGGTGATGCACGTTCTCAATGTCGCCATGCTCTGCACTGAAGAAGAAGCAGCAAAGCGCCCCACGATGCAGGAAGTCGTGCGAATCTTATCGGAGCATCAGCAACAATGA 2889 45.24 MTNRKHSKFVCKKMRFFAIILLLQLQILQLYFSPAFSASLTESQALLSFKNSISDDPRSSLSSWNADVAPCTWARVTCDVRGHVLALHLSSLDLSGTLSPHLASLPFLTNVSFQLNKFSGGIPPEFASMSSLRHLNLSSNLLNGSIPREFSQLKNLQVLDVYNNNMTGVFPRVVTEIPNLRHLHLGGNFFSGRIPPEIGRLQFLEFLAIHGNDLEGPIPATIGNLTNLRQLFIGYYNTFVGGIPAAIGNLSELVLLDAASCGLSGKFPPELGKLQKLTKLFLQENALSGSLTDLGGLKNIQSLDISCNMLVGEIPISFAEFKNLTLLHLFDNKLSGEIPGFMGDLPNLEILQLWNNNFTGSIPRNLGKNRMLLILDLAFNQLTGTIPSEICHGNHLEVLILMGNSLHGSIPESLGNCPSLRRILLWGNALNGSIPKGLLGLPNLTQIDLHDNFLSGELPLTDSVSVNLLQISLSNNMISGSLPPTIGNLLAVQKLLLDRNKFSGEIPSTIGRLQQLSRINFSQNKFSGRIVPEISECKHLIFLDLSGNELSGEIPNNITNMKLLTYMNLSRNHLVGSIPASIVHMQSLTSVDFSYNNLSGLVLGTGQFGYFNYTSFLGNPYLCGAYLGPCNHQEHMKLSLSTPLRLLLVFGSFFCLFALTVALIFKVRSLRRAREFQGWRLTAFQRLGFSVDEVLNCLKKENAIAKGGYGTVYEGVMPSGDQVTVKRLPKMSDGCSNDDGFDTEIQALGRIRHRHVVRLLGFCSNHDTGLLVYEYMPNGNLYEVLHGKKGGHLLWDTRYKIAIGIANGLCYLHHHCSPPIVHRDVKSNNIMLDTNFDPQLANSGLAKFLQDSGALDRSALAPEHVDEKWDVYSFGVVLFELVSDRNPVGELSDGVDIVEWVRKMTNSEEEGIHKMVDQRLSCVPLDEVMHVLNVAMLCTEEEAAKRPTMQEVVRILSEHQQQ 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2635527 2639024 + CmaCh07G006100.1 Cma07g00610 297925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00610 962 SUPERFAMILY L domain-like 60 385 - -
Cma07g00610 962 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 19 960 - -
Cma07g00610 962 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 19 960 - -
Cma07g00610 962 SUPERFAMILY L domain-like 372 629 - -
Cma07g00610 962 Gene3D Transferase(Phosphotransferase) domain 1 776 962 - -
Cma07g00610 962 SMART LRR_typ_2 177 201 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 489 513 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 585 608 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 345 369 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 153 176 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 370 393 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 129 152 IPR003591 -
Cma07g00610 962 SMART LRR_typ_2 274 297 IPR003591 -
Cma07g00610 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 820 832 IPR008271 GO:0004672|GO:0006468
Cma07g00610 962 SMART serkin_6 698 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00610 962 SUPERFAMILY Protein kinase-like (PK-like) 692 956 IPR011009 -
Cma07g00610 962 Coils Coil 953 962 - -
Cma07g00610 962 Pfam Protein tyrosine and serine/threonine kinase 699 956 IPR001245 GO:0004672|GO:0006468
Cma07g00610 962 Gene3D Ribonuclease Inhibitor 382 638 IPR032675 -
Cma07g00610 962 Pfam Leucine rich repeat 125 165 IPR001611 GO:0005515
Cma07g00610 962 Gene3D Phosphorylase Kinase; domain 1 675 775 - -
Cma07g00610 962 Pfam Leucine Rich Repeat 179 199 IPR001611 GO:0005515
Cma07g00610 962 Pfam Leucine rich repeat N-terminal domain 41 79 IPR013210 -
Cma07g00610 962 Gene3D Ribonuclease Inhibitor 39 193 IPR032675 -
Cma07g00610 962 Gene3D Ribonuclease Inhibitor 194 290 IPR032675 -
Cma07g00610 962 Gene3D Ribonuclease Inhibitor 291 381 IPR032675 -
Cma07g00610 962 ProSiteProfiles Protein kinase domain profile. 698 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00610 Cma-Chr7:2635527 Cma16g00736 Cma-Chr16:3881525 0 dispersed
Cma09g00630 Cma-Chr9:2969162 Cma07g00610 Cma-Chr7:2635527 5.05E-149 dispersed
Cma07g00607 Cma-Chr7:2629596 Cma07g00610 Cma-Chr7:2635527 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68691 PF07714 PK_Tyr_Ser-Thr 3.10E-34 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00610 - - cmos:111463083 1859.34