Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00621 ATGAAATATTCGACCGTCTCCTCATTCTTTCCTTTGATTATTAATCGCCCACCACCAACCCATTCCCTCCATTCCCATTTCTCTCTTCTTAAACGCCATCCCTCTTCTCAAAATCCCCACGCCATCGCTTCAAAAACGCCTCCAAAACGTTCAACCTCAAATCTTCATTCATATACCCAGATGGGTTTTGACGATCTTCCTAATACGGGTCTTCTATTGGGATTGGGGTTAACGCTTCAATCCAAGCCGGCGTGCCTTTCTCAAAAACCCAACAAGCCTGTCGATTTGTTCAGTTTCCCCGCCGTCGAATCCGAGCCGTCCTTAACTTTGGGGCTTTCTACTACGGCTGACTTGTGTCGTCAACCATCGCCTCACAGCACGGTTTCTTCCCTCTCTGGCGGAAAGGTCAAGCGTGAAAGAGACGTTTCCGGCGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGGGTTAGTGATGAAGAGGAAGATGGGTCTAATGCTAGGAAGAAACTTAGGCTAACTAAAGAACAATCCGCCCTCTTGGAGGAGAGCTTCAAACTTCACTGCACTCTCAACCCTAAGCAAAAACAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGAAGACTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAACCAAGCCTCTGTTCATGCAAATGCCAGCGGCAACACTCACCATGTGCCCCTCCTGCGAGCGGATCGGTGGCGCCACCGCCACTGTTAACGGCAACGGGAATCCCAAGGGGGCATTTTCAATGGCTCCAAAGCCCCAGTTTTACAAACCCTTCACCAATCCCTCTGCTGCTTGCTAA 951 48.37 MKYSTVSSFFPLIINRPPPTHSLHSHFSLLKRHPSSQNPHAIASKTPPKRSTSNLHSYTQMGFDDLPNTGLLLGLGLTLQSKPACLSQKPNKPVDLFSFPAVESEPSLTLGLSTTADLCRQPSPHSTVSSLSGGKVKRERDVSGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHCTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLTKPLFMQMPAATLTMCPSCERIGGATATVNGNGNPKGAFSMAPKPQFYKPFTNPSAAC 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2669609 2671984 - CmaCh07G006210.1 Cma07g00621 297936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00621 316 Pfam Homeobox associated leucine zipper 223 257 IPR003106 GO:0006355|GO:0043565
Cma07g00621 316 SUPERFAMILY Homeodomain-like 159 224 IPR009057 -
Cma07g00621 316 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 61 316 - -
Cma07g00621 316 MobiDBLite consensus disorder prediction 31 59 - -
Cma07g00621 316 ProSiteProfiles 'Homeobox' domain profile. 163 223 IPR001356 GO:0003677
Cma07g00621 316 SMART HOX_1 165 227 IPR001356 GO:0003677
Cma07g00621 316 Pfam Homeodomain 167 221 IPR001356 GO:0003677
Cma07g00621 316 ProSitePatterns 'Homeobox' domain signature. 198 221 IPR017970 GO:0000981|GO:0006355
Cma07g00621 316 Gene3D - 173 219 - -
Cma07g00621 316 PANTHER - 61 316 - -
Cma07g00621 316 Coils Coil 229 259 - -
Cma07g00621 316 CDD homeodomain 167 224 IPR001356 GO:0003677
Cma07g00621 316 MobiDBLite consensus disorder prediction 134 170 - -
Cma07g00621 316 SMART halz 223 266 IPR003106 GO:0006355|GO:0043565
Cma07g00621 316 MobiDBLite consensus disorder prediction 117 133 - -
Cma07g00621 316 MobiDBLite consensus disorder prediction 117 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01764 Cma-Chr1:11857318 Cma07g00621 Cma-Chr7:2669609 2.00E-57 dispersed
Cma07g00621 Cma-Chr7:2669609 Cma17g00930 Cma-Chr17:6988226 9.52E-74 dispersed
Cma11g00346 Cma-Chr11:1713075 Cma07g00621 Cma-Chr7:2669609 1.74E-55 dispersed
Cma04g00846 Cma-Chr4:4348299 Cma07g00621 Cma-Chr7:2669609 4.85E-103 transposed
Cma03g00879 Cma-Chr3:6478531 Cma07g00621 Cma-Chr7:2669609 4.67E-143 wgd
Cma07g00621 Cma-Chr7:2669609 Cma09g00321 Cma-Chr9:1324538 6.50E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35383 PF00046 Homeodomain 1.40E-15 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00621 K09338 - csv:101218782 401.364