Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00621 | ATGAAATATTCGACCGTCTCCTCATTCTTTCCTTTGATTATTAATCGCCCACCACCAACCCATTCCCTCCATTCCCATTTCTCTCTTCTTAAACGCCATCCCTCTTCTCAAAATCCCCACGCCATCGCTTCAAAAACGCCTCCAAAACGTTCAACCTCAAATCTTCATTCATATACCCAGATGGGTTTTGACGATCTTCCTAATACGGGTCTTCTATTGGGATTGGGGTTAACGCTTCAATCCAAGCCGGCGTGCCTTTCTCAAAAACCCAACAAGCCTGTCGATTTGTTCAGTTTCCCCGCCGTCGAATCCGAGCCGTCCTTAACTTTGGGGCTTTCTACTACGGCTGACTTGTGTCGTCAACCATCGCCTCACAGCACGGTTTCTTCCCTCTCTGGCGGAAAGGTCAAGCGTGAAAGAGACGTTTCCGGCGAGGATATTGAAGAAGAGAAAGCTTCTTCTCGGGTTAGTGATGAAGAGGAAGATGGGTCTAATGCTAGGAAGAAACTTAGGCTAACTAAAGAACAATCCGCCCTCTTGGAGGAGAGCTTCAAACTTCACTGCACTCTCAACCCTAAGCAAAAACAAGCCTTAGCCAGAGAGTTAAATCTTCGGCCTCGACAAGTTGAAGTTTGGTTCCAGAACAGAAGAGCCAGGACAAAGCTAAAGCAAACAGAGGTAGATTGCGAGTTTCTAAAGAGATGCTGCGAAACGCTAACAGACGAAAACAGAAGACTGCAAAAAGAGCTGCAAGAACTGAAAGCCCTGAAACTAACCAAGCCTCTGTTCATGCAAATGCCAGCGGCAACACTCACCATGTGCCCCTCCTGCGAGCGGATCGGTGGCGCCACCGCCACTGTTAACGGCAACGGGAATCCCAAGGGGGCATTTTCAATGGCTCCAAAGCCCCAGTTTTACAAACCCTTCACCAATCCCTCTGCTGCTTGCTAA | 951 | 48.37 | MKYSTVSSFFPLIINRPPPTHSLHSHFSLLKRHPSSQNPHAIASKTPPKRSTSNLHSYTQMGFDDLPNTGLLLGLGLTLQSKPACLSQKPNKPVDLFSFPAVESEPSLTLGLSTTADLCRQPSPHSTVSSLSGGKVKRERDVSGEDIEEEKASSRVSDEEEDGSNARKKLRLTKEQSALLEESFKLHCTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTDENRRLQKELQELKALKLTKPLFMQMPAATLTMCPSCERIGGATATVNGNGNPKGAFSMAPKPQFYKPFTNPSAAC | 316 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2669609 | 2671984 | - | CmaCh07G006210.1 | Cma07g00621 | 297936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00621 | 316 | Pfam | Homeobox associated leucine zipper | 223 | 257 | IPR003106 | GO:0006355|GO:0043565 | |
Cma07g00621 | 316 | SUPERFAMILY | Homeodomain-like | 159 | 224 | IPR009057 | - | |
Cma07g00621 | 316 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 | 61 | 316 | - | - | |
Cma07g00621 | 316 | MobiDBLite | consensus disorder prediction | 31 | 59 | - | - | |
Cma07g00621 | 316 | ProSiteProfiles | 'Homeobox' domain profile. | 163 | 223 | IPR001356 | GO:0003677 | |
Cma07g00621 | 316 | SMART | HOX_1 | 165 | 227 | IPR001356 | GO:0003677 | |
Cma07g00621 | 316 | Pfam | Homeodomain | 167 | 221 | IPR001356 | GO:0003677 | |
Cma07g00621 | 316 | ProSitePatterns | 'Homeobox' domain signature. | 198 | 221 | IPR017970 | GO:0000981|GO:0006355 | |
Cma07g00621 | 316 | Gene3D | - | 173 | 219 | - | - | |
Cma07g00621 | 316 | PANTHER | - | 61 | 316 | - | - | |
Cma07g00621 | 316 | Coils | Coil | 229 | 259 | - | - | |
Cma07g00621 | 316 | CDD | homeodomain | 167 | 224 | IPR001356 | GO:0003677 | |
Cma07g00621 | 316 | MobiDBLite | consensus disorder prediction | 134 | 170 | - | - | |
Cma07g00621 | 316 | SMART | halz | 223 | 266 | IPR003106 | GO:0006355|GO:0043565 | |
Cma07g00621 | 316 | MobiDBLite | consensus disorder prediction | 117 | 133 | - | - | |
Cma07g00621 | 316 | MobiDBLite | consensus disorder prediction | 117 | 170 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01764 | Cma-Chr1:11857318 | Cma07g00621 | Cma-Chr7:2669609 | 2.00E-57 | dispersed | |
Cma07g00621 | Cma-Chr7:2669609 | Cma17g00930 | Cma-Chr17:6988226 | 9.52E-74 | dispersed | |
Cma11g00346 | Cma-Chr11:1713075 | Cma07g00621 | Cma-Chr7:2669609 | 1.74E-55 | dispersed | |
Cma04g00846 | Cma-Chr4:4348299 | Cma07g00621 | Cma-Chr7:2669609 | 4.85E-103 | transposed | |
Cma03g00879 | Cma-Chr3:6478531 | Cma07g00621 | Cma-Chr7:2669609 | 4.67E-143 | wgd | |
Cma07g00621 | Cma-Chr7:2669609 | Cma09g00321 | Cma-Chr9:1324538 | 6.50E-70 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35383 | PF00046 | Homeodomain | 1.40E-15 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00621 | K09338 | - | csv:101218782 | 401.364 |