Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00631 ATGAATAATGTTAATGGCAACAACTGTAACTGGTTAGGTTTCTCTGTGTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTGCTGCTGCCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTATAACTATGGCATTTACTATGGTGTTGATGGAGAACATGGTGGTTTTTATTCACCATTGTCTGTCATGCCGCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCAGAAGCGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCTACTATGGGGTCCCATCACTATGAAAGCAATGCCAGGGAAGCTATTGCTCTCAGCTTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGCACATTTTTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATTCTGCCCGATGGGTGTAATCTGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGTTCCTAGGGGCTATGCTGCCACTGACAATAGTTCCTTCGAACAGAAGATGTTGAGTTTCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGTCCCAGCTCTCAATCAAGCTGTGTCACAGCCACACAGCATGTCTCACCTGTCATGGGTGACTGTTCTGCCATGGATTCAAAGAAAAGAATCCATGAGAAGTTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGTCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAGAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGTAGGCAGGAATATGTTGCTCACCTGAGAAGGAGAAGCAGTGGATTCTCGAGGGGGGCCTCGATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATAGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTACGACATAGCAGCCATAAAATTTCGAGGAATGAATGCAGTTACTAATTTTGATATCACAAGGTATGACGTCGAGCGGATCATCGCTAGCAACACGCTTCTTAGTGGTGATGTAGCTAAAAGAAAGCAGCAGCCGGATTTTAATAATGAATCTCTTAGTGAAAGCCCTCCTACTCACAACAGCAATGCAGAGGCCTCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTGTATCAGTCATCCCAGCAGCAGCTCATTCCAAAGCCTCGGTTGTTGTCTGCAATAACCGATGATGGTTCACAGCTACGAGTCGAAGACTCGGCCAAAATGATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTGTTCGGAATGCCTCAACCGACATCTAGGCCGTTTGCTGCCCCAGCTAGTAATATGAACTCCTCCTCCTCCTCCTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGGTGGACTGATACTTAA 1902 46.32 MNNVNGNNCNWLGFSVSPNVNMELSSSSAAAASPSIPANLFHSPSQYNYGIYYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPEAVSSSTPKLEDFFGGATMGSHHYESNAREAIALSLDSIFCHQNPTHEPNNQPYAHFSSLRSREVMLQDSKVILPDGCNLQQHPTVAESEISGMKNWAVPRGYAATDNSSFEQKMLSFMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPVMGDCSAMDSKKRIHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDVAKRKQQPDFNNESLSESPPTHNSNAEASMPLPSQSSQSESDWKMALYQSSQQQLIPKPRLLSAITDDGSQLRVEDSAKMMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSRPFAAPASNMNSSSSSSSWIASAQQLRAANCMSQLPVFAGWTDT 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2740186 2743409 - CmaCh07G006310.1 Cma07g00631 297946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00631 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 580 - -
Cma07g00631 633 SUPERFAMILY DNA-binding domain 390 450 IPR016177 GO:0003677
Cma07g00631 633 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 8 580 - -
Cma07g00631 633 CDD AP2 288 355 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 Pfam AP2 domain 391 441 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 Pfam AP2 domain 289 347 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 ProSiteProfiles AP2/ERF domain profile. 289 355 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 Gene3D AP2/ERF domain 288 357 IPR036955 GO:0003700|GO:0006355
Cma07g00631 633 Gene3D AP2/ERF domain 391 451 IPR036955 GO:0003700|GO:0006355
Cma07g00631 633 Coils Coil 356 376 - -
Cma07g00631 633 MobiDBLite consensus disorder prediction 476 510 - -
Cma07g00631 633 CDD AP2 390 451 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 SUPERFAMILY DNA-binding domain 288 357 IPR016177 GO:0003677
Cma07g00631 633 ProSiteProfiles AP2/ERF domain profile. 391 449 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 SMART rav1_2 391 455 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 SMART rav1_2 289 361 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 MobiDBLite consensus disorder prediction 470 510 - -
Cma07g00631 633 PRINTS Ethylene responsive element binding protein signature 290 301 IPR001471 GO:0003700|GO:0006355
Cma07g00631 633 PRINTS Ethylene responsive element binding protein signature 431 451 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00122 Cma-Chr5:533391 Cma07g00631 Cma-Chr7:2740186 0 dispersed
Cma07g00631 Cma-Chr7:2740186 Cma11g00388 Cma-Chr11:1927730 1.20E-119 dispersed
Cma07g00939 Cma-Chr7:4516453 Cma07g00631 Cma-Chr7:2740186 6.75E-12 dispersed
Cma12g00614 Cma-Chr12:3226740 Cma07g00631 Cma-Chr7:2740186 0 wgd
Cma03g00890 Cma-Chr3:6544296 Cma07g00631 Cma-Chr7:2740186 0 wgd
Cma07g00631 Cma-Chr7:2740186 Cma09g00308 Cma-Chr9:1272511 1.60E-168 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35385 PF00847 AP2 1.20E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00631 K09285 - csv:101203323 1096.26