Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00631 | ATGAATAATGTTAATGGCAACAACTGTAACTGGTTAGGTTTCTCTGTGTCCCCTAACGTTAACATGGAGCTTTCTTCTTCCTCTGCTGCTGCTGCCTCCCCTTCAATTCCTGCAAATCTTTTTCACTCCCCATCTCAGTATAACTATGGCATTTACTATGGTGTTGATGGAGAACATGGTGGTTTTTATTCACCATTGTCTGTCATGCCGCTCAAGTCTGATGGTTCAATTTGTTCAATGGAAGCTCTCAGCAGGCAGCACCCAGAAGCGGTGAGTAGCTCTACTCCAAAACTAGAGGATTTCTTTGGTGGTGCTACTATGGGGTCCCATCACTATGAAAGCAATGCCAGGGAAGCTATTGCTCTCAGCTTAGACAGTATATTTTGCCATCAAAACCCAACTCATGAGCCCAACAACCAACCCTATGCACATTTTTCATCCTTAAGAAGCCGTGAAGTGATGCTTCAAGACTCGAAGGTAATTCTGCCCGATGGGTGTAATCTGCAGCAGCACCCAACAGTGGCAGAGAGTGAGATTTCTGGTATGAAGAATTGGGCTGTTCCTAGGGGCTATGCTGCCACTGACAATAGTTCCTTCGAACAGAAGATGTTGAGTTTCATGAGTGAAAATGGTGGTGAATCTGGTCCCATTAATGCCATGGCTTATGGAGATTTACAGTCATTGAGCTTGTCCATGACTATGAGTCCCAGCTCTCAATCAAGCTGTGTCACAGCCACACAGCATGTCTCACCTGTCATGGGTGACTGTTCTGCCATGGATTCAAAGAAAAGAATCCATGAGAAGTTGGATCAGAAGCAAATTGTTCATAGGAAGTCTTTAGATACCTTTGGTCAGAGAACCTCACAGTATAGAGGGGTTACAAGGCACAGATGGACGGGTAGGTATGAAGCACATTTATGGGACAACAGTTGCAAGAAAGAAGGTCAAAGCAGGAAGGGAAGGCAAGTGTACCTTGGAGGTTATGATATGGAAGAGAAAGCCGCTAGAGCTTATGATCTTGCTGCACTCAAGTACTGGGGACCCTCCACCCACATTAACTTTCCTTTGGAAAACTATCAGAAAGAATTAGAGGAAATGAAAAACATGAGTAGGCAGGAATATGTTGCTCACCTGAGAAGGAGAAGCAGTGGATTCTCGAGGGGGGCCTCGATTTACAGAGGCGTAACAAGACATCATCAACATGGAAGATGGCAGGCTCGGATAGGCCGAGTTGCTGGTAACAAAGATCTGTATCTTGGGACATTCAGTACTCAAGAGGAAGCGGCCGAGGCCTACGACATAGCAGCCATAAAATTTCGAGGAATGAATGCAGTTACTAATTTTGATATCACAAGGTATGACGTCGAGCGGATCATCGCTAGCAACACGCTTCTTAGTGGTGATGTAGCTAAAAGAAAGCAGCAGCCGGATTTTAATAATGAATCTCTTAGTGAAAGCCCTCCTACTCACAACAGCAATGCAGAGGCCTCTATGCCTTTGCCCTCACAGAGTAGTCAAAGTGAATCAGACTGGAAGATGGCTCTGTATCAGTCATCCCAGCAGCAGCTCATTCCAAAGCCTCGGTTGTTGTCTGCAATAACCGATGATGGTTCACAGCTACGAGTCGAAGACTCGGCCAAAATGATGGGAGCTCATTTCTCCAATGCATCTTCAATGGTGACCAGCTGCAGCTTGAGCAGCTCAAGGGAGGAGAGTCCAGACAAGACAAGCCTTTCAATGGTGTTCGGAATGCCTCAACCGACATCTAGGCCGTTTGCTGCCCCAGCTAGTAATATGAACTCCTCCTCCTCCTCCTCCTCCTGGATTGCATCTGCCCAGCAGTTGAGGGCAGCCAATTGTATGAGCCAGTTGCCAGTTTTTGCTGGGTGGACTGATACTTAA | 1902 | 46.32 | MNNVNGNNCNWLGFSVSPNVNMELSSSSAAAASPSIPANLFHSPSQYNYGIYYGVDGEHGGFYSPLSVMPLKSDGSICSMEALSRQHPEAVSSSTPKLEDFFGGATMGSHHYESNAREAIALSLDSIFCHQNPTHEPNNQPYAHFSSLRSREVMLQDSKVILPDGCNLQQHPTVAESEISGMKNWAVPRGYAATDNSSFEQKMLSFMSENGGESGPINAMAYGDLQSLSLSMTMSPSSQSSCVTATQHVSPVMGDCSAMDSKKRIHEKLDQKQIVHRKSLDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQKELEEMKNMSRQEYVAHLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGMNAVTNFDITRYDVERIIASNTLLSGDVAKRKQQPDFNNESLSESPPTHNSNAEASMPLPSQSSQSESDWKMALYQSSQQQLIPKPRLLSAITDDGSQLRVEDSAKMMGAHFSNASSMVTSCSLSSSREESPDKTSLSMVFGMPQPTSRPFAAPASNMNSSSSSSSWIASAQQLRAANCMSQLPVFAGWTDT | 633 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2740186 | 2743409 | - | CmaCh07G006310.1 | Cma07g00631 | 297946 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00631 | 633 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 8 | 580 | - | - | |
Cma07g00631 | 633 | SUPERFAMILY | DNA-binding domain | 390 | 450 | IPR016177 | GO:0003677 | |
Cma07g00631 | 633 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT | 8 | 580 | - | - | |
Cma07g00631 | 633 | CDD | AP2 | 288 | 355 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | Pfam | AP2 domain | 391 | 441 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | Pfam | AP2 domain | 289 | 347 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | ProSiteProfiles | AP2/ERF domain profile. | 289 | 355 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | Gene3D | AP2/ERF domain | 288 | 357 | IPR036955 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | Gene3D | AP2/ERF domain | 391 | 451 | IPR036955 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | Coils | Coil | 356 | 376 | - | - | |
Cma07g00631 | 633 | MobiDBLite | consensus disorder prediction | 476 | 510 | - | - | |
Cma07g00631 | 633 | CDD | AP2 | 390 | 451 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | SUPERFAMILY | DNA-binding domain | 288 | 357 | IPR016177 | GO:0003677 | |
Cma07g00631 | 633 | ProSiteProfiles | AP2/ERF domain profile. | 391 | 449 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | SMART | rav1_2 | 391 | 455 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | SMART | rav1_2 | 289 | 361 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | MobiDBLite | consensus disorder prediction | 470 | 510 | - | - | |
Cma07g00631 | 633 | PRINTS | Ethylene responsive element binding protein signature | 290 | 301 | IPR001471 | GO:0003700|GO:0006355 | |
Cma07g00631 | 633 | PRINTS | Ethylene responsive element binding protein signature | 431 | 451 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00122 | Cma-Chr5:533391 | Cma07g00631 | Cma-Chr7:2740186 | 0 | dispersed | |
Cma07g00631 | Cma-Chr7:2740186 | Cma11g00388 | Cma-Chr11:1927730 | 1.20E-119 | dispersed | |
Cma07g00939 | Cma-Chr7:4516453 | Cma07g00631 | Cma-Chr7:2740186 | 6.75E-12 | dispersed | |
Cma12g00614 | Cma-Chr12:3226740 | Cma07g00631 | Cma-Chr7:2740186 | 0 | wgd | |
Cma03g00890 | Cma-Chr3:6544296 | Cma07g00631 | Cma-Chr7:2740186 | 0 | wgd | |
Cma07g00631 | Cma-Chr7:2740186 | Cma09g00308 | Cma-Chr9:1272511 | 1.60E-168 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35385 | PF00847 | AP2 | 1.20E-13 | CL0081 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00631 | K09285 | - | csv:101203323 | 1096.26 |