Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00647 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTTGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTTCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACGAAACCTTAAAAATCTCCTTTCAACAAAATTAAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCGTTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGAATCAGAACTTTCAAAGATGAAGATAATGACTACAGAGGAGGCGGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCAATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAGTCCTATTCAAAAAGTTCTTCTCCAAGATAACCAAAATCCTGATATAAATTAG 933 42.87 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPRNLKNLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVESELSKMKIMTTEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRSPIQKVLLQDNQNPDIN 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2809788 2815056 + CmaCh07G006470.1 Cma07g00647 297962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00647 310 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cma07g00647 310 Gene3D - 2 59 - -
Cma07g00647 310 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cma07g00647 310 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 CDD SANT_TRF 6 57 - -
Cma07g00647 310 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Cma07g00647 310 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cma07g00647 310 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cma07g00647 310 SMART sant 4 59 IPR001005 -
Cma07g00647 310 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cma07g00647 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cma07g00647 310 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 Coils Coil 240 277 - -
Cma07g00647 310 Gene3D - 118 196 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00647 K09422 MYBP; transcription factor MYB, plant - csv:101202913 468.774
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00443 Cma-Chr4:2265920 Cma07g00647 Cma-Chr7:2809788 6.24E-36 dispersed
Cma07g00647 Cma-Chr7:2809788 Cma16g00312 Cma-Chr16:1455421 6.05E-79 dispersed
Cma03g00911 Cma-Chr3:6605105 Cma07g00647 Cma-Chr7:2809788 3.61E-180 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00312 . 1 328 Single Myb Histone (SMH) Gene Family AT1G49950 61.2 2.1e-77 286.6
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT1G49950 53.5 6.6e-63 238.4
Cma07g00647 . 1 247 Single Myb Histone (SMH) Gene Family AT1G49950 51.2 3.4e-59 226.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT5G67580 53.6 8.3e-66 248.1
Cma07g00647 . 1 250 Single Myb Histone (SMH) Gene Family AT5G67580 52.9 1.8e-65 246.9
Cma07g00647 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.4 1.1e-57 221.1
Cma03g00911 . 20 266 Single Myb Histone (SMH) Gene Family AT3G49850 50.6 4.1e-57 219.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003466 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 1 4 4 0 45
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35388 PF00538 Linker_histone 1.70E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00647 Cma_Chr07 FPKM 11.753318 12.899648 11.444524 12.686602 10.92831 13.933684 11.353353 16.53915 17.035536 15.959127