Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00647 ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTTGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTTCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACGAAACCTTAAAAATCTCCTTTCAACAAAATTAAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCGTTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGAATCAGAACTTTCAAAGATGAAGATAATGACTACAGAGGAGGCGGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCAATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAGTCCTATTCAAAAAGTTCTTCTCCAAGATAACCAAAATCCTGATATAAATTAG 933 42.87 MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPRNLKNLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVESELSKMKIMTTEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRSPIQKVLLQDNQNPDIN 310
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 2809788 2815056 + CmaCh07G006470.1 Cma07g00647 297962
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00647 310 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Cma07g00647 310 Gene3D - 2 59 - -
Cma07g00647 310 SUPERFAMILY Winged helix DNA-binding domain 116 194 IPR036390 -
Cma07g00647 310 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 186 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 CDD SANT_TRF 6 57 - -
Cma07g00647 310 Pfam linker histone H1 and H5 family 123 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 SUPERFAMILY Homeodomain-like 2 64 IPR009057 -
Cma07g00647 310 PANTHER TELOMERE REPEAT-BINDING FACTOR 2 1 289 - -
Cma07g00647 310 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Cma07g00647 310 SMART sant 4 59 IPR001005 -
Cma07g00647 310 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Cma07g00647 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Cma07g00647 310 SMART h15plus2 116 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cma07g00647 310 Coils Coil 240 277 - -
Cma07g00647 310 Gene3D - 118 196 IPR036388 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00443 Cma-Chr4:2265920 Cma07g00647 Cma-Chr7:2809788 6.24E-36 dispersed
Cma07g00647 Cma-Chr7:2809788 Cma16g00312 Cma-Chr16:1455421 6.05E-79 dispersed
Cma03g00911 Cma-Chr3:6605105 Cma07g00647 Cma-Chr7:2809788 3.61E-180 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35388 PF00538 Linker_histone 1.70E-11 CL0123 Cma TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00647 K09422 - csv:101202913 468.774