Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00647 | ATGGGTGCGCCAAAGCAGAAATGGACAGCTGAAGAAGAAGCTGCCCTTAAAGCAGGAGTGATCAAGCATGGAGCAGGAAAATGGCGCACAATACTAACAGATCCAGAGTTCAGCTCAATTTTGCATCAGCGCTCAAATGTGGATCTCAAGGACAAGTGGAGAAATATAAATGTTACTGCAATATGGGGCTCTAGGCAAAAAGCTAAGCTTGCACTTAAAAAGAATCCTTTGGCCCTAAAACATCACGATGATCCTATGCCTGTAAGCACCGTTCATCAGAATGAGGAGATTGTTGACGCTAAGCCACTTGCAATTTCAAATGGAACAATTCGCACTAATGGTCCAAAAGAGCCACTAGCAAGATTGGACAAACTTATATCAGAGGCAATTAACAACTTAAAGGAGCCAAGGGGTTCTGACCGGGCTGCAATTGCTATGTACATAGAGGAGCATTACTGGGCCCCACGAAACCTTAAAAATCTCCTTTCAACAAAATTAAAGCATATGACGGCAAATGGAAAGTTGATAAAGGTAAAGCACAAGTACAGAATTGATCCAAATTCAACCTTATCTGGAAGAAGAAATGTTCCGTTGTTACTCCTTGAGGACAAGCAGATGGATTCTTCAAAGGCCGAGAAGAGTGAAGTCAAAATCATCACTAAATCCCAAGTTGAATCAGAACTTTCAAAGATGAAGATAATGACTACAGAGGAGGCGGCTATAGCTGCTGCACGTGCAGTAGCTGAGGCAGAGGCTGCCATTGCAGAGGCTGAAAGGGCAGCAAGAGAAGCAGAAGAAGCAGAGGCTGAAGCTGAATCAGCACAAGTTTTTGCTGAAGCGGCAATGAAGGCATTGGAGTGCAGAATGTTCCCTAGTAGAAGTCCTATTCAAAAAGTTCTTCTCCAAGATAACCAAAATCCTGATATAAATTAG | 933 | 42.87 | MGAPKQKWTAEEEAALKAGVIKHGAGKWRTILTDPEFSSILHQRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNPLALKHHDDPMPVSTVHQNEEIVDAKPLAISNGTIRTNGPKEPLARLDKLISEAINNLKEPRGSDRAAIAMYIEEHYWAPRNLKNLLSTKLKHMTANGKLIKVKHKYRIDPNSTLSGRRNVPLLLLEDKQMDSSKAEKSEVKIITKSQVESELSKMKIMTTEEAAIAAARAVAEAEAAIAEAERAAREAEEAEAEAESAQVFAEAAMKALECRMFPSRSPIQKVLLQDNQNPDIN | 310 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 2809788 | 2815056 | + | CmaCh07G006470.1 | Cma07g00647 | 297962 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00647 | 310 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
Cma07g00647 | 310 | Gene3D | - | 2 | 59 | - | - | |
Cma07g00647 | 310 | SUPERFAMILY | Winged helix DNA-binding domain | 116 | 194 | IPR036390 | - | |
Cma07g00647 | 310 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 118 | 186 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cma07g00647 | 310 | CDD | SANT_TRF | 6 | 57 | - | - | |
Cma07g00647 | 310 | Pfam | linker histone H1 and H5 family | 123 | 180 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cma07g00647 | 310 | SUPERFAMILY | Homeodomain-like | 2 | 64 | IPR009057 | - | |
Cma07g00647 | 310 | PANTHER | TELOMERE REPEAT-BINDING FACTOR 2 | 1 | 289 | - | - | |
Cma07g00647 | 310 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 289 | IPR044597 | GO:0003691 | |
Cma07g00647 | 310 | SMART | sant | 4 | 59 | IPR001005 | - | |
Cma07g00647 | 310 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Cma07g00647 | 310 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Cma07g00647 | 310 | SMART | h15plus2 | 116 | 181 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Cma07g00647 | 310 | Coils | Coil | 240 | 277 | - | - | |
Cma07g00647 | 310 | Gene3D | - | 118 | 196 | IPR036388 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00443 | Cma-Chr4:2265920 | Cma07g00647 | Cma-Chr7:2809788 | 6.24E-36 | dispersed | |
Cma07g00647 | Cma-Chr7:2809788 | Cma16g00312 | Cma-Chr16:1455421 | 6.05E-79 | dispersed | |
Cma03g00911 | Cma-Chr3:6605105 | Cma07g00647 | Cma-Chr7:2809788 | 3.61E-180 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35388 | PF00538 | Linker_histone | 1.70E-11 | CL0123 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00647 | K09422 | - | csv:101202913 | 468.774 |