Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00648 ATGACTTCCTTGCCCTCCACCACCTCCTCCTCCTCCTCCCCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCCCTTCTTCTTCTTCTTCCCCTTCTTCTTCTTCCCCTTCTTCTTCTTCTTCTTCTTCCTCCCCTTCTTCTTCTTCTTCTTCTTCTTCAATTCATTCTTTTGGATTCCTTTCAACGAAGCATCGCTGCAAGTCCGAGCCATCTCCTATAGAAAGTGACATTGCATCAGGTTTTCCTTATATTGTAACTGAAGAATTTATTTTCATCAACTATCTCAGAAAAATGGAAAGGTTTTTGGACGAGAATTTTGGAGGCGTCAAACCCAAAAACTCGTCTGACGAGGTGCTCCAGAAGTGGAGGGATCTTTGTGGAGTGGTTAAGAACCCTAAAAGGAGGTTTCGCTTTACCGCCAATCTCTCCAAGCGTGGCGAAGCTGCTGCTATGCGCCAGAGTAATCAGGAGAAGTTGAGGGTCGCAGTTTTAGTCTCAAAAGCTGCATTTCAATTCATCCAAGGTATGCAACCAAGTGATTATAATGTTCCGGAGGATGTCAAAGCTGCAGGTTTCCATATTTGTGCTGATGAACTCGGGGCAATTGTTGAAGGCCATGATCCAAAGAAGTTAAAACATCATGGCGGTGTTGAAGGAATTGCTCAGAAGCTCTGTACATCAACAACAACTGGGCTTAATGGTGATGCTGATGCACTCAACCGTAGGCAAGAGATTTATGGAGTTAATAAATTTGCTGAGAGTGAACAGAGGAGTTTCTTGGTGTTCGTTTGGGAGGCACTCCAAGACATGACTCTCATGATCCTTGGACTCTGTGCCTTCGTCTCTTTGGTAGTTGGCATAATAACGGAAGGATGGCCGCATGGGGCTCATGATGGCCTTGGAATTGTTGCCAGTATCTTGTTAGTTGTATTTGTGACAGCAACTAGTGATTATCGACAATCCTTGCAGTTCAAGGACTTGGATAAGGAGAAAAAGAAGATATCAATTCAGGTTACAAGGAATGATTATAGACAGAAAATGTCAATTTATGATTTGCTTCCTGGAGATATTGTGCACCTGTCTCTTGGGGACCAAGTTCCTGCAGATGGACTATTTGTTTCAGGGTTTTCTGTGTTGATTGACGAGTCAAGTTTGACTGGAGAAAGTGAGCCAGTGATGGTGAGTGCAGAAAGCCCTTTTCTTTTATCAGGAACTAAAGTTCAAGATGGATCCTGCAAGATGATGATCACTACTGTTGGGATGAGAACCCAATGGGGTAAGTTGATGGCCACTCTTAGTGAAGGTGGAGATGATGAAACTCCATTGCAGGTGAAATTGAATGGAGTGGCAACAATTATTGGGAAAATAGGTCTTTTCTTTGCCATCATCACATTCGCTGTGTTGGTTCAAGGATTGGTTAGCCAGAAACTTCGGGAAGGGACTCACTGGAACTGGTCAGGAGATGACGCATTAGAGATATTGGAATTCTTTGCTGTTGCAGTCACAATTGTTGTTGTTGCTGTGCCAGAGGGGCTTCCTTTGGCTGTGACATTAAGCCTTGCCTTTGCCATGAAGAAAATGATGAATGATAAAGCACTTGTCCGTCACCTTGCAGCTTGTGAAACAATGGGTTCTGCCACAACTATTTGTAGTGACAAAACTGGAACAATCACTACAAATCACATGACGGTGGTCAAATCATGCATTTGCATGAATGTCAAAGAATCAAGTAATAATCCATCAAGCTTCTGCTCTGATCTTCCATCCTCCGTTGTCAAGATTCTGCTACAATCAATATTCAACAACACTGGGGGAGAAGTCGTAATCAACAAAAATGGCAAACGTGAGTTGTTGGGCACTCCCACTGAGACTGCATTATTAGAGTTTGGTCTTTCACTCGGTGGTGATTTTCAGGCTGAGAGACAGGCAGGTAAACTTATTAAAGTTGAGCCATTCAATTCTTTGAAAAAGCGGATGGGTGTTGTCCTACAATTTCCTGAAGGTGGTTTCCGAGCTCACACTAAAGGTGCTTCAGAAATAGTATTGGCTGCCTGTGACAAGGTGATCAACTCGAGTGGTGAGGTTGTTCCTTTAGATGAAGCTTCCACCAAACGTCTCAATATTATTATCGATCAATTTGCTGGTGAGGCTCTCCGAACACTTTGCCTTGCCTATATGGAACTGGAAAATGGATTCTCTGTCAATGATCCTATTCCCGTTTCTGGTTATACCTGCATTGGTATTGTGGGTATTAAAGATCCTGTTCGTCCTGGTGTTAAGGAGTCTGTTGCAGTTTGTCGTTCAGCTGGTATTACTGTACGAATGGTTACTGGCGACAATATTAATACTGCAAAAGCTATTGCTAAGGAATGTGGAATTCTCACCGATGATGGCATAGCCATCGAGGGTCCAGATTTCAGGGAGAAAACTCAAGAGGAATTGCTTAAAATTATTCCCAAAATTCAGGTGATGGCTCGATCCTCACCTCTAGATAAGCACACTCTGGTCAAGCATTTGCGGACCACCTTTGACGAAGTTGTTGCAGTTACTGGTGATGGAACAAACGATGCTCCTGCGCTTCACGAAGCAGATATTGGACTAGCAATGGGCATCGCTGGAACTGAGGTCGCCAAAGAGAGTGCTGATGTGATCATTCTTGATGACAATTTCTCTACTATCGTGACTGTGGGAAAATGGGGTCGTTCTGTTTACATAAATATTCAAAAATTCGTGCAATTCCAGCTGACTGTCAACATTGTGGCGTTGATTGTGAACTTCTCTTCAGCTTGTTTGACAGGTAATGCACCCCTTACTGCAGTCCAGCTGTTGTGGGTGAACATGATTATGGACACACTTGGAGCTTTGGCTCTCGCCACTGAGCCTCCGAATGATGAGTTGATGAAGCGCTTGCCCGTTGGAAGGAGAGGAAGTTTTATCAGCAATGTCATGTGGAGAAATATCTTGGGGCAGTCCGTGTATCAGCTCTCAGTGATATGGTTTTTACAGGCCAAAGGGAAAGAAGCGTTTGATCTAGACAGCACTGATTCTGATCAGATACTGAATACCCTCATCTTCAATTCCTTTGTGTTCTGTCAGATTTTTAACGAAATAAGTTCCAGGGAGATGGACAAAATCGATGTCTTTCAAGGCATGCTTAATAACTATGTGTTTGTTGCTGTCATTGGTTCCACCGTTCTGTTCCAAATACTAATCATCGAATTTTTGGGAACATTTGCAAGCACAACCCCTCTGACTTCATCGGAGTGGCTGTTTAGCGTGGTGGTTGGATTTCTAGGCATGCCCATTGCTGCTTTCTTAAAGACTATTCCGGTATAA 3342 43.33 MTSLPSTTSSSSSPSFSSSSSSSSSSPSSSSSPSSSSPSSSSSSSSPSSSSSSSSIHSFGFLSTKHRCKSEPSPIESDIASGFPYIVTEEFIFINYLRKMERFLDENFGGVKPKNSSDEVLQKWRDLCGVVKNPKRRFRFTANLSKRGEAAAMRQSNQEKLRVAVLVSKAAFQFIQGMQPSDYNVPEDVKAAGFHICADELGAIVEGHDPKKLKHHGGVEGIAQKLCTSTTTGLNGDADALNRRQEIYGVNKFAESEQRSFLVFVWEALQDMTLMILGLCAFVSLVVGIITEGWPHGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNDYRQKMSIYDLLPGDIVHLSLGDQVPADGLFVSGFSVLIDESSLTGESEPVMVSAESPFLLSGTKVQDGSCKMMITTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAIITFAVLVQGLVSQKLREGTHWNWSGDDALEILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTITTNHMTVVKSCICMNVKESSNNPSSFCSDLPSSVVKILLQSIFNNTGGEVVINKNGKRELLGTPTETALLEFGLSLGGDFQAERQAGKLIKVEPFNSLKKRMGVVLQFPEGGFRAHTKGASEIVLAACDKVINSSGEVVPLDEASTKRLNIIIDQFAGEALRTLCLAYMELENGFSVNDPIPVSGYTCIGIVGIKDPVRPGVKESVAVCRSAGITVRMVTGDNINTAKAIAKECGILTDDGIAIEGPDFREKTQEELLKIIPKIQVMARSSPLDKHTLVKHLRTTFDEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVGKWGRSVYINIQKFVQFQLTVNIVALIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDELMKRLPVGRRGSFISNVMWRNILGQSVYQLSVIWFLQAKGKEAFDLDSTDSDQILNTLIFNSFVFCQIFNEISSREMDKIDVFQGMLNNYVFVAVIGSTVLFQILIIEFLGTFASTTPLTSSEWLFSVVVGFLGMPIAAFLKTIPV 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2816696 2822860 - CmaCh07G006480.1 Cma07g00648 297963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00648 1113 PRINTS H+-transporting ATPase (proton pump) signature 852 868 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00648 1113 PRINTS H+-transporting ATPase (proton pump) signature 884 909 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00648 1113 PRINTS H+-transporting ATPase (proton pump) signature 708 726 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00648 1113 CDD P-type_ATPase_Ca_PMCA-like 241 985 - -
Cma07g00648 1113 Gene3D - 267 1109 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 749 760 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 771 781 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 552 566 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 876 888 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 383 397 - -
Cma07g00648 1113 PRINTS P-type cation-transporting ATPase superfamily signature 852 871 - -
Cma07g00648 1113 Pfam Cation transporter/ATPase, N-terminus 215 284 IPR004014 -
Cma07g00648 1113 Pfam Ca2+-ATPase N terminal autoinhibitory domain 104 148 IPR024750 GO:0005516
Cma07g00648 1113 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 558 761 IPR023299 GO:0000166
Cma07g00648 1113 SMART Cation_ATPase_N_a_2 213 289 IPR004014 -
Cma07g00648 1113 Pfam haloacid dehalogenase-like hydrolase 836 892 - -
Cma07g00648 1113 SUPERFAMILY Calcium ATPase, transduction domain A 338 432 IPR008250 -
Cma07g00648 1113 Gene3D - 562 756 IPR023299 GO:0000166
Cma07g00648 1113 Pfam E1-E2 ATPase 336 530 - -
Cma07g00648 1113 SFLD p-type atpase 534 904 IPR044492 -
Cma07g00648 1113 SUPERFAMILY Calcium ATPase, transmembrane domain M 215 1112 IPR023298 -
Cma07g00648 1113 SFLD C1.7: P-type atpase like 534 904 - -
Cma07g00648 1113 Gene3D - 549 897 IPR023214 -
Cma07g00648 1113 SUPERFAMILY HAD-like 550 957 IPR036412 -
Cma07g00648 1113 PANTHER CATION TRANSPORTING ATPASE 104 1112 - -
Cma07g00648 1113 ProSitePatterns E1-E2 ATPases phosphorylation site. 554 560 IPR018303 -
Cma07g00648 1113 Pfam Cation transport ATPase (P-type) 612 690 - -
Cma07g00648 1113 Gene3D - 116 176 - -
Cma07g00648 1113 Pfam Cation transporting ATPase, C-terminus 937 1110 IPR006068 -
Cma07g00648 1113 MobiDBLite consensus disorder prediction 1 54 - -
Cma07g00648 1113 Gene3D - 239 435 - -
Cma07g00648 1113 PANTHER CALCIUM-TRANSPORTING ATPASE 1 104 1112 - -
Cma07g00648 1113 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 493 578 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00648 1113 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 818 933 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma07g00648 1113 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 209 1113 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00914 Cma07g00648 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00648 Cma-Chr7:2816696 Cma15g00783 Cma-Chr15:3900023 0 dispersed
Cma14g00550 Cma-Chr14:2735274 Cma07g00648 Cma-Chr7:2816696 0 transposed
Cma01g01785 Cma-Chr1:11948321 Cma07g00648 Cma-Chr7:2816696 0 wgd
Cma03g00914 Cma-Chr3:6618043 Cma07g00648 Cma-Chr7:2816696 0 wgd
Cma07g00648 Cma-Chr7:2816696 Cma09g00290 Cma-Chr9:1192471 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00648 K01537 - csv:101212315 1855.49