Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00649 ATGGAAGCCCCTTCTTCTTCCTTCGGCCTTCTCGACCATTATTGGAGCCCCACCACTTCAATTCCTTCTCCCACTCCCTGGACTCGCCACCAGGACAAGATTTTCGAGCACGCTCTCGTCATGGTGCCGGAGAATTCTCCCAACCGTTGGATGAAGATCGCCGGTCTTGTTCCTGGTAAATCAGCGGCCGAGGTTAGAGACCATTACGACGCCTTGGTTTCTGACGTACAGAACATCGACTCTGGACGAGTTGAACTACCGAACTATGCCGATGAGTCGTTGTTGAGTTCGCCGGAGAGGGAGTCGCCGGGTCAGCTGCCGGAGAAAGCGTCTGAGAGGAAGAAGGGGAAGCCCTGGACCAAAAAGGAACACCAGCTATTTTTATTGGGGCTGAAGAAATTTGGAAAGGGTGATTGGAGAAGTATTTCCAGAAACGTGGTGATTACGAGAACGCCAACTCAAGTAGCCAGCCATGCCCAGAAGTATTTTCTACGCCAAGAGTCGGCAAAGAAAGACCGGAAGAGATCCAGCATACATGACATCACCACCGTAGAATGCAATTTAGTAACGGCGGTGGCTGCTACCAGTGAAGGTGGATGTCCCATTGTTCACGAAACTACCTCCGCTACCTCCTCCGTCGGACCTTTTTCAACGCTATTTTCAATCTTATCCAAGATGGTCACGTTGCAAGTGGCGCGACCGCTGGTTCGCATGAATGAATACCGGCCGTTGATCTCCTCATCTTTGGGGAGGTTGAAGCTGGTGAACGTTGCTGTGAACAATGCGATTGGATTGAAGTGGAGTTGTGGAGGATGTCGGTTCTGTTGCTATGCTGTTGCTACTGGTTTTTTCCAACCATTTAAAGCGTTGACGAACAATTGCTCTGCGATTCACGGTAAAGGTTGCCATGAGACCTCAACTGGTGGGAAGTCGACAAATATCGTCTGGCACGATTGCCCCATCGGGAAGCCTCAAAGAGAAAAGTTGATTCAGCAGAAAGGCTGTGTCATATGGATAACTGGTCTCAGTGGTTCAGGAAAAAGCACTTTGGCATGTGCATTAAGCCAAGGCTTGCATTCAAGAAGAAAGCTGACCTACGTCCTTGATGGTGACAATATTAGGCATGGTCTAAACAGTGATCTTAGTTTTGAATCCAAAGATCGAGCGGAAAACATAAGGAGAATTGGTGAGGTAGCAAGCCTATTCGCAGATGCTGGGATTATTTGTATTGCTAGTTTAATATCCCCTTTCCGGAAGGACAGAGATGCCTGTCGAGCCCTGTTGGCAGAAGGCGATTTCATTGAGGTTTTCCTTGATGTGCCACTTAAGGTATGTGAAGCCCGGGATCCAAAGGGTCTGTATAAACTGTCCCGAGCTGGAAAGATTCAAGGATTCACGGGGATAGATGATCCATATGAAGAACCATTAAATTGCGAGATCTTATTGCAATACAAAGAAGGAATCTGCTCGTCCCCTAATGAAATGGCGGAAGAAGTAATTTCATATTTAGAAGAGAGAGGGAAACATCTCGTTTCCTTCGGTTTGTGCTTTCCAATTCTTGGTTCATTTAGCATTCTGCTTGCGAATAAGAGATTCGCCAGCTTCCGAGTTCGAAGCTCAAAGAGGCAAAGGAAGATGGGGAAGAAACAGCACAGTAAAGACCGTTTGTTTATTACGAAAACTGAATGGGCCACTGAATGGGGCGGAGCCAAATCCAAGGACAATCAAACTCCTTTCAAGCGGCTTCCTTTTTATTGCTGCGCGCTTACATTTACACCCTTTGAGGACCCTGTATGTACTGCCGATGGCAGCATCTTCGAGATAATGAATATCATCCCTTATATTCGGAAGTACGGTAAAAATCCTGTTACTGGAGCTCCCCTGAAGCAGGAGGATCTTATTCCTCTGATTTTCCACAAGAACTCTGAAGGTGAGTTCCAGTGCCCTGTACTAAACAAAGTTTTTACCGAGTTCACTCACATAGTTGCTATAAAGACCACTGGAAATGTCTTCTGCTACGAGGCAATTAAAGAACTAAATATCAAGACAAAAAACTGGAAGGAACTTCTCACTGATGAACCATTTAGTAGGGAAGATATTATAACCATTCAGAACCCTACTGCACTTGATAGTAAGGTTCTCCTGGATTTTGATCATGTGAAAAAAAGCCTGAAAGTTGATAATGAAGAACTTCAGAAAATGAAATCAGATCCAACATATAACATAAATGTCTCGGGGGACATCAAGCAGATGTTGAAGGAACTTGGAACAGAAAAAGGAAGGCAAACTGCACTTCATGGGGGAGGTGGTGGCAAGGCACAGAAAGAAAGGGCAGCTGCCCTTGCTGCAATTTTAGAAGCTAGGTCACGCATTAAAGAAAATTCCAAGGAAAATGCAAAAGGAGAGGAGACACCTACTCAGGCATTTAGTATTGTGGATGCTGCATCTGCTTCAGTACATGGAAGAAGTGCAGCTGCTGCGAAAGCTGCTCCTAGTGAAAAAACTGCAGCTCGAATTGCCATGCACATGGCCGGTGAGAGAGCACCGGTGAATGCTAAGATGGTAAAGAGTCGTTACACTACGGGGGCTGCATCCCGATCCTTTACATCTACATCTTATGATCCTGTTACAAAGAATGAACACGAATATATCAAGGTTGAGAAAAATCCAAAGAAGAAAGGATATGTACAGTTGCACACAACTCATGGAGATTTGAATATTGAGCTGCATTGTGATATTACTCCAAGGGCATGTGAGAATTTCATCACACTGTGTGAAAATGGCTACTACAATGGAGTAGCTTTTCATAGAAGTATTAGGAATTTTATGATTCAAGGTGGTGATCCAACTGGTACTGGGAGAGGAGGTGAATCTATATGGGGAAAGCCCTTCAAAGATGAACTCAACTCCAAGTTGCTTCATTCTGGAAGGGGAATTGTCAGTATGGCAAATAGTGGTCCCCACACTAATGGTTCCCAGTTCTTTATTCTATACAAATCTGCCAATCATTTAAACTTCAAGCATACTGTATTTGGCGGTGTTGTTGGTGGTTTGACTGCTTTGGCAGCTATGGAAAAGGTTCCTGTTGATGACAATGATCGGCCTCTGGAGGAGATCAAGATTACAAGTGTCACAGTCTTTGTCAATCCATACTCAGAACCCGATGAAGAAGAAGAAAACAAGCAAAAAGACGAGAAGAATGTTGAAGATGAAGAAAACGATAAGGTTGGATCATGGTATAGCAACCCAGGCACCGGGGTAGCTGAAAATGGAGCTGCAGGTGGCGGTGTAGGGAAATACCTGAAAGCAAGGAATGCCCAGTCCAAACCCCCTGCTGTTGATGCTAGTCTAGGAGCAACTACCTCGACCAAGAAAAGGACTGCTGCAGGAGAGTTCAAAGACTTCTCTTCGTGTTATTGGAATGGGGAGCGGGTAAAAAGGGTGCATTTGGCCTATTGA 3459 45.24 MEAPSSSFGLLDHYWSPTTSIPSPTPWTRHQDKIFEHALVMVPENSPNRWMKIAGLVPGKSAAEVRDHYDALVSDVQNIDSGRVELPNYADESLLSSPERESPGQLPEKASERKKGKPWTKKEHQLFLLGLKKFGKGDWRSISRNVVITRTPTQVASHAQKYFLRQESAKKDRKRSSIHDITTVECNLVTAVAATSEGGCPIVHETTSATSSVGPFSTLFSILSKMVTLQVARPLVRMNEYRPLISSSLGRLKLVNVAVNNAIGLKWSCGGCRFCCYAVATGFFQPFKALTNNCSAIHGKGCHETSTGGKSTNIVWHDCPIGKPQREKLIQQKGCVIWITGLSGSGKSTLACALSQGLHSRRKLTYVLDGDNIRHGLNSDLSFESKDRAENIRRIGEVASLFADAGIICIASLISPFRKDRDACRALLAEGDFIEVFLDVPLKVCEARDPKGLYKLSRAGKIQGFTGIDDPYEEPLNCEILLQYKEGICSSPNEMAEEVISYLEERGKHLVSFGLCFPILGSFSILLANKRFASFRVRSSKRQRKMGKKQHSKDRLFITKTEWATEWGGAKSKDNQTPFKRLPFYCCALTFTPFEDPVCTADGSIFEIMNIIPYIRKYGKNPVTGAPLKQEDLIPLIFHKNSEGEFQCPVLNKVFTEFTHIVAIKTTGNVFCYEAIKELNIKTKNWKELLTDEPFSREDIITIQNPTALDSKVLLDFDHVKKSLKVDNEELQKMKSDPTYNINVSGDIKQMLKELGTEKGRQTALHGGGGGKAQKERAAALAAILEARSRIKENSKENAKGEETPTQAFSIVDAASASVHGRSAAAAKAAPSEKTAARIAMHMAGERAPVNAKMVKSRYTTGAASRSFTSTSYDPVTKNEHEYIKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRACENFITLCENGYYNGVAFHRSIRNFMIQGGDPTGTGRGGESIWGKPFKDELNSKLLHSGRGIVSMANSGPHTNGSQFFILYKSANHLNFKHTVFGGVVGGLTALAAMEKVPVDDNDRPLEEIKITSVTVFVNPYSEPDEEEENKQKDEKNVEDEENDKVGSWYSNPGTGVAENGAAGGGVGKYLKARNAQSKPPAVDASLGATTSTKKRTAAGEFKDFSSCYWNGERVKRVHLAY 1152
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2826784 2835864 + CmaCh07G006490.1 Cma07g00649 297964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00649 1152 PANTHER RING-TYPE E3 UBIQUITIN-PROTEIN LIGASE PPIL2 547 1136 - -
Cma07g00649 1152 Gene3D - 875 1060 IPR029000 -
Cma07g00649 1152 CDD RING-Ubox_PPIL2 583 655 IPR026951 -
Cma07g00649 1152 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 899 1046 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 585 640 IPR013083 -
Cma07g00649 1152 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 895 1046 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 SMART Ubox_2 584 646 IPR003613 GO:0004842|GO:0016567
Cma07g00649 1152 CDD SANT 118 163 IPR001005 -
Cma07g00649 1152 Gene3D - 304 509 IPR027417 -
Cma07g00649 1152 TIGRFAM apsK: adenylyl-sulfate kinase 316 485 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cma07g00649 1152 SUPERFAMILY RING/U-box 582 649 - -
Cma07g00649 1152 ProSiteProfiles U-box domain profile. 580 653 IPR003613 GO:0004842|GO:0016567
Cma07g00649 1152 CDD APSK 336 482 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cma07g00649 1152 Gene3D - 22 86 - -
Cma07g00649 1152 CDD SANT 26 69 IPR001005 -
Cma07g00649 1152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 993 1005 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 978 993 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 909 924 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 1006 1021 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 935 947 IPR002130 GO:0000413|GO:0003755
Cma07g00649 1152 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 114 166 IPR006447 GO:0003677
Cma07g00649 1152 MobiDBLite consensus disorder prediction 90 119 - -
Cma07g00649 1152 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Cma07g00649 1152 ProSiteProfiles Myb-like domain profile. 26 73 IPR001005 -
Cma07g00649 1152 MobiDBLite consensus disorder prediction 105 119 - -
Cma07g00649 1152 Hamap Adenylyl-sulfate kinase [cysC]. 332 507 IPR002891 GO:0000103|GO:0004020|GO:0005524
Cma07g00649 1152 Pfam Myb-like DNA-binding domain 117 163 IPR001005 -
Cma07g00649 1152 CDD cyclophilin_RING 895 1053 - -
Cma07g00649 1152 Pfam Adenylylsulphate kinase 333 485 - -
Cma07g00649 1152 SMART sant 23 75 IPR001005 -
Cma07g00649 1152 SMART sant 115 165 IPR001005 -
Cma07g00649 1152 SUPERFAMILY Cyclophilin-like 895 1063 IPR029000 -
Cma07g00649 1152 Gene3D - 117 168 - -
Cma07g00649 1152 ProSiteProfiles SANT domain profile. 114 167 IPR017884 -
Cma07g00649 1152 SUPERFAMILY Homeodomain-like 113 168 IPR009057 -
Cma07g00649 1152 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 547 1136 IPR044666 -
Cma07g00649 1152 MobiDBLite consensus disorder prediction 1048 1086 - -
Cma07g00649 1152 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Cma07g00649 1152 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 506 IPR027417 -
Cma07g00649 1152 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 930 947 IPR020892 GO:0003755|GO:0006457
Cma07g00649 1152 SUPERFAMILY Homeodomain-like 25 81 IPR009057 -
Cma07g00649 1152 MobiDBLite consensus disorder prediction 1054 1076 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00916 Cma07g00649 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02512 Cma-Chr4:17217203 Cma07g00649 Cma-Chr7:2826784 3.36E-76 dispersed
Cma06g01124 Cma-Chr6:7568663 Cma07g00649 Cma-Chr7:2826784 1.31E-29 dispersed
Cma06g01655 Cma-Chr6:10251844 Cma07g00649 Cma-Chr7:2826784 3.58E-22 dispersed
Cma07g00649 Cma-Chr7:2826784 Cma16g00313 Cma-Chr16:1493599 2.28E-97 dispersed
Cma11g01970 Cma-Chr11:12900518 Cma07g00649 Cma-Chr7:2826784 1.37E-31 dispersed
Cma12g00786 Cma-Chr12:5365522 Cma07g00649 Cma-Chr7:2826784 3.90E-43 dispersed
Cma01g01723 Cma-Chr1:11685309 Cma07g00649 Cma-Chr7:2826784 1.09E-42 transposed
Cma06g00492 Cma-Chr6:2313704 Cma07g00649 Cma-Chr7:2826784 5.06E-45 transposed
Cma14g01093 Cma-Chr14:7824560 Cma07g00649 Cma-Chr7:2826784 1.72E-100 transposed
Cma03g00917 Cma-Chr3:6629564 Cma07g00649 Cma-Chr7:2826784 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35389 PF01583 APS_kinase 9.40E-68 CL0023 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00649 K10598 - csv:101204462 1051.58