Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00650 ATGGATACCTTGTTTCGGCTTGTCAATCTTCAGTCTGAACAATCTTACAACTCCAGTAGAAGTAGAACCAATTCTAGCAGCTCCAGATCGTCTAGACAAAACCAATACCATTACCATCAACAGGAAGACGAAGAATGCTACAACGTTCTCATGGATGAGGAAGATTTCTCATCGTCTAGTAATTCTAGACAATACTACAATCCTTACCTTCCCAACCCATCTTCCACCGTCTCCACCACGCCCACCGCCACCACCCCAACCCCGATCGATCAATTCTCATTCGTCTCCCCCGCTCCGGATTTCAACTTCGAATTTTCCGGCAGGTGGGCCCCTGATATTCTCCTAGAAACCGCCAGGGCCATTTCTGACAGGAATAGTGCTCGTGTTCAGCAGCTGATGTGGATGCTAAACGAACTTAGCTCCCCCTATGGGGATACGGATCAAAAGCTAGCTGCCTATTTCCTGCAGGCCTTGTTTACCCGCATGACTGATTCCGGCGACCGTAATTATCGCGCTTTGTCCTCCGCCTCAGAGAAAACATGCTCATTCGAATCAACTAGGAAAATGATGCTCAAGTTTCAGGAGGTTAGTCCCTGGACCACTTTTGGGCATGTCTCTTGCAATGGCGCATTAATTGAAGCCTTAGAAGGCGAATCAAAGCTACACATAATCGATATCAGTAACACGTATTGCACTCAGTGGCCCACTTTGCTAGAAGCCCTCGCGACTCGTACCGACGATACGCCCCACCTACGCCTCACAACTGTCGTCATCACTAAGCCCGGCGATGGAAGTGGAGTAGCCGCATCTCAAAAAGTAATGAAGGAAATAGGTACAAGAATGGAAAAGTTCGCTAGGCTTATGGGCGTACCTTTCAAATTCCACACGCTATACCATTCCGGTGACCTTTCAGATTTGGACTTGGCGAAATTAGACATCAAAGAAGACGAGGCACTCGCCGTCAACTGCATCGGAGCGTTACGTTCCGTGGCGGCAGTTGATAACCGCCGAGATTTCTTGATTGCATCTTTCCGCAGTTTACGGCCGCGGATAATCACTGTGATAGAAGAGGAAGCCGACCTCGACGTAGGCGTCGATGGGATTGAATTTCTGAGTGGGTTCCAAGAATGTCTGCGTTGGTTTAGGGTTTACTTCGAGACATTGGACGAGAGTTTCACGAGGACAAGCAACGAGCGGTTGATGCTTGAGAGAGCAGCCGGTAGGGCAATCGTGGACCTGGTGGCTTGCTCGGCAGCGGAGTCGGTGGAGAGAAGGGAATCGGCGGCGCGGTGGGCACAGCGGTTGCATGGAAGCGGTTTCAGTCCGCTGATATTCAGCGACGAAGTATGCGACGACGTAAGGGCACTATTGAGGAGGTACAAGGAAGGGTGGGCAATGACACAGAGCTCGGACGTCGCCGGAATATTCTTGACGTGGAAAGAGCAGCCGGTGGTGTGGGCCAGTGCATGGAAACCTTGA 1479 50.64 MDTLFRLVNLQSEQSYNSSRSRTNSSSSRSSRQNQYHYHQQEDEECYNVLMDEEDFSSSSNSRQYYNPYLPNPSSTVSTTPTATTPTPIDQFSFVSPAPDFNFEFSGRWAPDILLETARAISDRNSARVQQLMWMLNELSSPYGDTDQKLAAYFLQALFTRMTDSGDRNYRALSSASEKTCSFESTRKMMLKFQEVSPWTTFGHVSCNGALIEALEGESKLHIIDISNTYCTQWPTLLEALATRTDDTPHLRLTTVVITKPGDGSGVAASQKVMKEIGTRMEKFARLMGVPFKFHTLYHSGDLSDLDLAKLDIKEDEALAVNCIGALRSVAAVDNRRDFLIASFRSLRPRIITVIEEEADLDVGVDGIEFLSGFQECLRWFRVYFETLDESFTRTSNERLMLERAAGRAIVDLVACSAAESVERRESAARWAQRLHGSGFSPLIFSDEVCDDVRALLRRYKEGWAMTQSSDVAGIFLTWKEQPVVWASAWKP 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2839388 2840866 + CmaCh07G006500.1 Cma07g00650 297965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00650 492 MobiDBLite consensus disorder prediction 58 84 - -
Cma07g00650 492 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 491 IPR005202 -
Cma07g00650 492 Pfam GRAS domain family 113 491 IPR005202 -
Cma07g00650 492 PANTHER PROTEIN SHORT-ROOT 1 491 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Cma07g00650 492 MobiDBLite consensus disorder prediction 13 35 - -
Cma07g00650 492 ProSiteProfiles GRAS family profile. 101 491 IPR005202 -
Cma07g00650 492 MobiDBLite consensus disorder prediction 13 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00650 Cma-Chr7:2839388 Cma08g00189 Cma-Chr8:1066984 6.43E-150 dispersed
Cma19g00942 Cma-Chr19:8381174 Cma07g00650 Cma-Chr7:2839388 1.98E-56 dispersed
Cma02g00539 Cma-Chr2:2967857 Cma07g00650 Cma-Chr7:2839388 0 transposed
Cma03g00933 Cma-Chr3:6683243 Cma07g00650 Cma-Chr7:2839388 4.94E-53 transposed
Cma03g00918 Cma-Chr3:6636169 Cma07g00650 Cma-Chr7:2839388 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35390 PF03514 GRAS 2.00E-102 CL0063 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00650 - - csv:101204711 853.973