Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00659 ATGAGCTGCAACGGTTGCCGCGTTCTCCGAAAGGGCTGCAGCGAGTCCTGTATTCTCCGCCCTTGCTTGCAGTGGATTGACACCTCTGAAGCCCAAGGCCACGCTACTGTCTTTGTCGCCAAGTTCTTCGGCCGTGCCGGTCTTATGTCTTTCATCTCCGCCGTTCCTGAATCTCAACGACCTTCTTTGTTTCAGTCTTTGCTGTTTGAAGCCTGTGGACGTACGGTCAATCCGGTCAACGGCGCCGTTGGTCTTCTCTGGACTGGAAACTGGCATATCTGTCAGGCAGCGGTGGAGACTGTTTTACGAGGCGGTACGTTGCGGCCGATGAATGAGTTTCTCGCCGCTGGATCTCCTAATCCGGCTTCCGATGAAACGTCCGAGGCTGAAGTCGCCTGTACCGACATGTGGAAGCTTCGAGATTCTTATCCAAATTCTCGATTCTCCAACTCCCGATCCAGACTCTCCCCAAAACGTAAACGATCTGAGGAATCCACAAAAAACCAACTGAACGACTTAGATCTCCGTTTAACGCCGAATTTTCCGGCGAAATCTACCCGGCGAGCCGCTACTCCGTCGATGAATTCCGAGGAATCCGAAACCACTACGTGCTTCGAAAGCGGCGGCTTGGTTGATCATCATCATCACCACTACCATCCAGAAGAACTGGTACCGGAACGGAAGATTCTCAATTTATTCGTCTAA 705 52.06 MSCNGCRVLRKGCSESCILRPCLQWIDTSEAQGHATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHICQAAVETVLRGGTLRPMNEFLAAGSPNPASDETSEAEVACTDMWKLRDSYPNSRFSNSRSRLSPKRKRSEESTKNQLNDLDLRLTPNFPAKSTRRAATPSMNSEESETTTCFESGGLVDHHHHHYHPEELVPERKILNLFV 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2878344 2879652 + CmaCh07G006590.1 Cma07g00659 297974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00659 234 MobiDBLite consensus disorder prediction 144 203 - -
Cma07g00659 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 234 - -
Cma07g00659 234 MobiDBLite consensus disorder prediction 184 203 - -
Cma07g00659 234 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Cma07g00659 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 234 - -
Cma07g00659 234 MobiDBLite consensus disorder prediction 156 170 - -
Cma07g00659 234 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00932 Cma07g00659 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00659 Cma-Chr7:2878344 Cma14g00811 Cma-Chr14:4107612 4.13E-54 dispersed
Cma01g01793 Cma-Chr1:11993723 Cma07g00659 Cma-Chr7:2878344 9.82E-64 wgd
Cma03g00932 Cma-Chr3:6676809 Cma07g00659 Cma-Chr7:2878344 2.20E-148 wgd
Cma07g00659 Cma-Chr7:2878344 Cma09g00281 Cma-Chr9:1154490 4.60E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35393 PF03195 LOB 1.90E-25 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00659 - - csv:101206615 396.741