Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00675 ATGGAAATTATGACTCTTGAAAAGTTGAAAGAGAATGATGAACGAATTCAAAGTACAGGAGAATCTGAACATGTTGATGAAATGCATCTCAGAACTCACAGGCATGAGCATATAATTACAGTAGAAAACTCCCGAAGCTGCAGCCCAGTTCCAATAGTAAACACTCATATAATATCAAATTTCAGCAGAAAGGCACAAATTTCAAGTTTGTATGGGGGGTTGCCAATCACAAGCTCAGAAGATCGTCCCAATTGCATGTCCAATGAAAAATCTCAAGTTCATGATGGTGTTTTCTCTGACTCCAATGCTAATCCTACTTTTGCACAAGTTATATCTATAGAGACAACTGACACCGCTTCACCTGTGTTATCAATTGGACGATTGAGTTCCACCAGGGATACTTCTGAGAAAGTAAGATCTGAGCCATCAGTTTCTGTGACTCCATCCTTCTCACAAGTCGAACCCCAATTTCCACTCAGATTGTCTGTGGAAAGAAAAGGTGGTATAGTTGGACAACAGCCACAGAAACTTCCTGAAGTTGTTTGTTCTTCTGAGATTGAGCCCAGATCTGATTTGGTAAGTGCTGAAGCCAGAGTTCAGAAGTTGGTCGAGAACTTGAATAGCAATTCACTTGAAACTATTAGAGCTGCAATAGCTGAACTCCGAAGTCTTGCGAAACTTAATACTGATAACCGGATTATGATTACAGAACATGGAGCAATCAGCTTTTTGGTTAAATTGCTATATTCTACAGATGCAATAATTCAAGAGCATGCTGTTACAACACTTCTCAACCTATCAATCTATGAAGACAACAGAATTGCCATTGCTGAGGCCAATGTAATTGAACCTCTAATTCACGTCCTTGGTACAGGAACCCCTGAAGCTAAGGAGAACGCAGCTGCCACTTTCTTTAGCCTTGCTATGGTGGAGGAAAACAGGGTAAAGATTGGGAGGTCTGAGGCCATTGGGCCTCTGGTTGAACTACTAGGGAATGGGACTCCTAGGGGAAGGAAAGATGCAACAACTGCATTGTTTTATCTGTCTATGCTTCCAGAGAACAAGGTCAAGATTGTGCAAGCTGGAGCTGTACAGCATCTTGTGGAGTTGATGGATCCATCAATTGGAATGGTTGACAAGACAGTTGCTGTTCTAGCAAATCTTTCTACAATCCAGGAGGGGAAGGTTGAAATTGGTAGAGGGGGTGGGATCCCTGTGTTGGTCGAGGCTATTGAATTGGGTTCTGCTAGAGGAAAAGAGAATGCAGCAGCTGCACTACTACGGATCTGCTCATCCTCTAATAAATTTTGCATCATGGCTATCCAAGAAGGAGTTATCCCACCCTTAGTGGCGTTGTCTCAATCTGGAACTACGAGGGCCAAGGATAAGGCTCAGGCACTGCTTAGCCTCTTCAGAAAGCATGTGCATAGTAATGTTGAAGAAGTCCACTAA 1452 42.56 MEIMTLEKLKENDERIQSTGESEHVDEMHLRTHRHEHIITVENSRSCSPVPIVNTHIISNFSRKAQISSLYGGLPITSSEDRPNCMSNEKSQVHDGVFSDSNANPTFAQVISIETTDTASPVLSIGRLSSTRDTSEKVRSEPSVSVTPSFSQVEPQFPLRLSVERKGGIVGQQPQKLPEVVCSSEIEPRSDLVSAEARVQKLVENLNSNSLETIRAAIAELRSLAKLNTDNRIMITEHGAISFLVKLLYSTDAIIQEHAVTTLLNLSIYEDNRIAIAEANVIEPLIHVLGTGTPEAKENAAATFFSLAMVEENRVKIGRSEAIGPLVELLGNGTPRGRKDATTALFYLSMLPENKVKIVQAGAVQHLVELMDPSIGMVDKTVAVLANLSTIQEGKVEIGRGGGIPVLVEAIELGSARGKENAAAALLRICSSSNKFCIMAIQEGVIPPLVALSQSGTTRAKDKAQALLSLFRKHVHSNVEEVH 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 2951642 2954379 - CmaCh07G006750.1 Cma07g00675 297990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00675 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 151 474 - -
Cma07g00675 483 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 53 - -
Cma07g00675 483 Gene3D - 180 482 IPR011989 -
Cma07g00675 483 SMART arm_5 351 390 IPR000225 GO:0005515
Cma07g00675 483 SMART arm_5 228 268 IPR000225 GO:0005515
Cma07g00675 483 SMART arm_5 310 350 IPR000225 GO:0005515
Cma07g00675 483 SMART arm_5 391 431 IPR000225 GO:0005515
Cma07g00675 483 SMART arm_5 269 309 IPR000225 GO:0005515
Cma07g00675 483 SUPERFAMILY ARM repeat 198 479 IPR016024 -
Cma07g00675 483 PANTHER U BOX DOMAIN-CONTAINING 151 474 - -
Cma07g00675 483 PANTHER U BOX DOMAIN-CONTAINING 1 53 - -
Cma07g00675 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 403 IPR000225 GO:0005515
Cma07g00675 483 Pfam Armadillo/beta-catenin-like repeat 271 308 IPR000225 GO:0005515
Cma07g00675 483 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Cma07g00675 483 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00507 Cma07g00675 CCT
Cma07g00675 Cma20g00982 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00507 Cma-Chr2:2723878 Cma07g00675 Cma-Chr7:2951642 1.63E-142 dispersed
Cma07g00675 Cma-Chr7:2951642 Cma20g00982 Cma-Chr20:5237544 9.98E-137 dispersed
Cma07g00672 Cma-Chr7:2945221 Cma07g00675 Cma-Chr7:2951642 2.29E-124 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00675 - K08332 csv:101214725 599.742