Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00689 ATGGCCATGGAGCTCATGCCCCAGCTCTCCCCGCTCCCCGTCTCCACCACCAACAATATGGAAGCCAACGCAGTCCAAGAAGCCGCCTCCGCCTACGACAGCGTCGACCTGCTCATCCGAGTGTTCTCCAGTGCCTACCAACCCCCACCCTCTATTCAATCCCCCAATTCTAATCATTCCAACTCCACCCTCGATTTCCCTACCGATGCCGTCTCCAAGTGTAAGAAGATCATTTCTCTCATGGGCCGGAGCCGGGTCGGCCACGCCCGCTTCCGAAGAGCTCCTCTCCCTCTCCCCCAAGTCCACCAGCAAATCCCGCCTCAGCGCCACCTCCCCGCCGTCGACCTTGTTTCTTCCACCGGCCGATGCCACTGTTCGAAGAAGAGAAAAGTGAGGGTGAAGAGAGTTGTGAGGGTGGCGGCGAAAAGCTTGAAAACGGCGGATATCCCAGCGGACGATTATTCATGGAGAAAATATGGTCAAAAGCCGATTAAAGGGTCTCCACATCCGAGGGGGTATTACAAGTGTAGCAGCATGAGAGGGTGCCCAGCCCGCAAACACGTAGAACGGGCCGTAGACGATCCGGCAATTCTAGTGGTCACCTACGAAGGCGACCACAATCACACCCTCACCGTACCCGAAGCCTCCAATCTCATCCTCGATTCCTCGTAG 672 56.85 MAMELMPQLSPLPVSTTNNMEANAVQEAASAYDSVDLLIRVFSSAYQPPPSIQSPNSNHSNSTLDFPTDAVSKCKKIISLMGRSRVGHARFRRAPLPLPQVHQQIPPQRHLPAVDLVSSTGRCHCSKKRKVRVKRVVRVAAKSLKTADIPADDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERAVDDPAILVVTYEGDHNHTLTVPEASNLILDSS 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3032530 3033597 + CmaCh07G006890.1 Cma07g00689 298004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00689 223 Pfam Plant zinc cluster domain 117 148 IPR018872 -
Cma07g00689 223 Pfam WRKY DNA -binding domain 152 208 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma07g00689 223 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma07g00689 223 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 103 IPR044810 GO:0003700
Cma07g00689 223 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 118 223 IPR044810 GO:0003700
Cma07g00689 223 Gene3D WRKY domain 134 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma07g00689 223 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 118 223 - -
Cma07g00689 223 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 15 103 - -
Cma07g00689 223 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma07g00689 223 SUPERFAMILY WRKY DNA-binding domain 145 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00689 Cma-Chr7:3032530 Cma20g00968 Cma-Chr20:4913335 3.31E-10 dispersed
Cma01g01820 Cma-Chr1:12075582 Cma07g00689 Cma-Chr7:3032530 1.11E-08 wgd
Cma03g00963 Cma-Chr3:6836165 Cma07g00689 Cma-Chr7:3032530 1.79E-34 wgd
Cma07g00689 Cma-Chr7:3032530 Cma09g00254 Cma-Chr9:1067795 4.52E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35395 PF03106 WRKY 5.10E-26 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00689 - - cmax:111496746 426.017