Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00689 | ATGGCCATGGAGCTCATGCCCCAGCTCTCCCCGCTCCCCGTCTCCACCACCAACAATATGGAAGCCAACGCAGTCCAAGAAGCCGCCTCCGCCTACGACAGCGTCGACCTGCTCATCCGAGTGTTCTCCAGTGCCTACCAACCCCCACCCTCTATTCAATCCCCCAATTCTAATCATTCCAACTCCACCCTCGATTTCCCTACCGATGCCGTCTCCAAGTGTAAGAAGATCATTTCTCTCATGGGCCGGAGCCGGGTCGGCCACGCCCGCTTCCGAAGAGCTCCTCTCCCTCTCCCCCAAGTCCACCAGCAAATCCCGCCTCAGCGCCACCTCCCCGCCGTCGACCTTGTTTCTTCCACCGGCCGATGCCACTGTTCGAAGAAGAGAAAAGTGAGGGTGAAGAGAGTTGTGAGGGTGGCGGCGAAAAGCTTGAAAACGGCGGATATCCCAGCGGACGATTATTCATGGAGAAAATATGGTCAAAAGCCGATTAAAGGGTCTCCACATCCGAGGGGGTATTACAAGTGTAGCAGCATGAGAGGGTGCCCAGCCCGCAAACACGTAGAACGGGCCGTAGACGATCCGGCAATTCTAGTGGTCACCTACGAAGGCGACCACAATCACACCCTCACCGTACCCGAAGCCTCCAATCTCATCCTCGATTCCTCGTAG | 672 | 56.85 | MAMELMPQLSPLPVSTTNNMEANAVQEAASAYDSVDLLIRVFSSAYQPPPSIQSPNSNHSNSTLDFPTDAVSKCKKIISLMGRSRVGHARFRRAPLPLPQVHQQIPPQRHLPAVDLVSSTGRCHCSKKRKVRVKRVVRVAAKSLKTADIPADDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERAVDDPAILVVTYEGDHNHTLTVPEASNLILDSS | 223 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3032530 | 3033597 | + | CmaCh07G006890.1 | Cma07g00689 | 298004 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00689 | 223 | Pfam | Plant zinc cluster domain | 117 | 148 | IPR018872 | - | |
Cma07g00689 | 223 | Pfam | WRKY DNA -binding domain | 152 | 208 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma07g00689 | 223 | ProSiteProfiles | WRKY domain profile. | 145 | 211 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma07g00689 | 223 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 15 | 103 | IPR044810 | GO:0003700 | |
Cma07g00689 | 223 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 118 | 223 | IPR044810 | GO:0003700 | |
Cma07g00689 | 223 | Gene3D | WRKY domain | 134 | 211 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cma07g00689 | 223 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 118 | 223 | - | - | |
Cma07g00689 | 223 | PANTHER | WRKY TRANSCRIPTION FACTOR 7-RELATED | 15 | 103 | - | - | |
Cma07g00689 | 223 | SMART | WRKY_cls | 150 | 210 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cma07g00689 | 223 | SUPERFAMILY | WRKY DNA-binding domain | 145 | 209 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00689 | Cma-Chr7:3032530 | Cma20g00968 | Cma-Chr20:4913335 | 3.31E-10 | dispersed | |
Cma01g01820 | Cma-Chr1:12075582 | Cma07g00689 | Cma-Chr7:3032530 | 1.11E-08 | wgd | |
Cma03g00963 | Cma-Chr3:6836165 | Cma07g00689 | Cma-Chr7:3032530 | 1.79E-34 | wgd | |
Cma07g00689 | Cma-Chr7:3032530 | Cma09g00254 | Cma-Chr9:1067795 | 4.52E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35395 | PF03106 | WRKY | 5.10E-26 | CL0274 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00689 | - | - | cmax:111496746 | 426.017 |