Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00692 ATGCTCTCTCTCTCTCTCTCTTCTTCCTCGGAGAGGACAGCACTCCGATGGACGGCATGGCGAGCTACTTTCCGCCACCACCTCAACCACAGCCACTACCGTCGCAGGCTTCTGGTCTTGAAGCTCCTCACTATCCCTATTATCAGCTTCCTCCTTCTTCATCACCGCCGTCTCAGCATTACCTCGCTCAACAGCCTCCCACCTTCGCTTCCTATGGCTTTCCTTTTTTTACCTCACGCAGCGTCCATCAATGAGGTCCGAACCCTATTCATAGCTGGCCTTTTTGAAGATGTCAAGCCCCGAGAAATTTACAATCTCTTCCGGGAATTTCCGGGATACGAGTCCTCTCATCTACGGAGTCCCTCGCAGACGACGCAGCCATTTGCATTTGCTGTATTCTCGGACCAGCAGTCTGCCATTGGTGCAATGCATGCAGTAAATGAAATATGCAAAAGGAACATGGAAGAAGAATTTAGCCCTGTTGAAGTTACAACTTCAGGGAACTCTCGACATACTCTTCATTTCTTTGAAATCTGGAACTCTGAGTTTGATTCGTTATTTTTACCTTTAAGCATTACTGGTCATTCATTGACCTTAAAAATAAGGTGGACCACTATTATTGCTGCCATAACACTAAACAGTTCTAGTTCATGTTCATTTTTCTTCCCTACAGATCCTTTATCTAATTTGTTTTATACAAACCTCTTTGATCCAATTCGTTTTTCTTCTGAATCTTTGTTTCAATTGGTCGCTCTTTCAAAGCTGCTAATACTAATTATAAGAAGGGGGAAATTTGTTCTATTAGTGGACTACTTGAGCTCTCTGCACTACCGACATTATCATCCATATGGCTTTGAACTATTTTGGATTCTTATATCCCTAACCATTCCCAAGACGTGCTGCTTTTTAGATATTCCAGGATACTATTTCATTGGTGAGAGATTTAAAGCGAAAGTAAGCTTTTCATATGAAAAGGTGTCTGAGCATTCCAGTGTTATGTTGTGTGAAATGTGCACTTGCAATGAATGGGTGCAGGATACTGCCTGTTCAACTGGAGCATTGAACCATCTGCAAGGCACAATTCTGTACTCGTCACCTCCTGGGGAGGGCATGCGGTTGGAGTACCCAAAATCCCGAATGGGCATGCGCAAGAAATTGAAATGA 1164 43.56 MLSLSLSSSSERTALRWTAWRATFRHHLNHSHYRRRLLVLKLLTIPIISFLLLHHRRLSITSLNSLPPSLPMAFLFLPHAASINEVRTLFIAGLFEDVKPREIYNLFREFPGYESSHLRSPSQTTQPFAFAVFSDQQSAIGAMHAVNEICKRNMEEEFSPVEVTTSGNSRHTLHFFEIWNSEFDSLFLPLSITGHSLTLKIRWTTIIAAITLNSSSSCSFFFPTDPLSNLFYTNLFDPIRFSSESLFQLVALSKLLILIIRRGKFVLLVDYLSSLHYRHYHPYGFELFWILISLTIPKTCCFLDIPGYYFIGERFKAKVSFSYEKVSEHSSVMLCEMCTCNEWVQDTACSTGALNHLQGTILYSSPPGEGMRLEYPKSRMGMRKKLK 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3040726 3044464 + CmaCh07G006920.1 Cma07g00692 298007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00692 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 168 IPR000504 GO:0003723
Cma07g00692 387 SUPERFAMILY RNA-binding domain, RBD 81 148 IPR035979 GO:0003676
Cma07g00692 387 SMART rrm1_1 88 157 IPR000504 GO:0003723
Cma07g00692 387 PANTHER RNA-BINDING PROTEIN-RELATED 342 373 - -
Cma07g00692 387 PANTHER RNA-BINDING PROTEIN-RELATED 72 149 - -
Cma07g00692 387 Gene3D - 82 164 IPR012677 -
Cma07g00692 387 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 342 373 - -
Cma07g00692 387 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 72 149 - -
Cma07g00692 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 151 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00965 Cma07g00692 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00692 Cma-Chr7:3040726 Cma08g00764 Cma-Chr8:4586112 6.32E-14 dispersed
Cma03g00965 Cma-Chr3:6844657 Cma07g00692 Cma-Chr7:3040726 5.77E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00692 - - cpep:111781367 146.362