Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00693 ATGCCCATAGCTCCTCCTCAATCCGATCCCCCTTTTTCCTTTTTTCATGAAGATTCTGATTCTGATTCAGATTCAGATTTCGGGTTAGCCAAGGGGAGAGCTCAGATTTGGGATTCTGCGGGCATGGACGGTGTAGCAGAGGCAGGCCGCGAGGCCACCAGAAAGAGAGGGGTTGACAATCAGAGGCCCTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTAGAGAGCCCAATAAGCGCTCTAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCTAGGGCTTACGATACGGCAGTCTTTTACCTCAGAGGTCCCTCCGCCAGACTTAATTTCCCCGAGTTGTTGGCCGGGGAAGGCCGCGGAATGAGCGGCGGTTGTGGCGGGGACATGTCGGCGGCTTCCATTCGGAAGAAAGCGACGGAGGTGGGAGCTCGAGTGGATGCTCTGGAGAGTTCGGTAGGTGATCACCAAAGGCAACACCAGCATCGGAGCCATGTGCGACAGGCATCGGCGTGTCCGGCAGAGAGTAAAGGGTACGGCGGGTATTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAATTGAAGAAGCGGATAGGGAGAGAGTGAAAGGGAAGAGAATTTTGTCGGAAAAAGAAGGGGGAGGGGAGGGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAGGGGCCTACAAAAAGCCACCACCGAAGCGATAAGATTTTGGAGAAGTTAA 777 54.18 MPIAPPQSDPPFSFFHEDSDSDSDSDFGLAKGRAQIWDSAGMDGVAEAGREATRKRGVDNQRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGMSGGCGGDMSAASIRKKATEVGARVDALESSVGDHQRQHQHRSHVRQASACPAESKGYGGYLDRVDLNKLPDPEEEIEEADRERVKGKRILSEKEGGGEGRKEGRKEGRKEGRRGLQKATTEAIRFWRS 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3047127 3048174 + CmaCh07G006930.1 Cma07g00693 298008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00693 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 50 205 - -
Cma07g00693 258 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 PRINTS Ethylene responsive element binding protein signature 102 122 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 MobiDBLite consensus disorder prediction 162 182 - -
Cma07g00693 258 Pfam AP2 domain 64 112 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 MobiDBLite consensus disorder prediction 1 28 - -
Cma07g00693 258 MobiDBLite consensus disorder prediction 198 258 - -
Cma07g00693 258 MobiDBLite consensus disorder prediction 208 247 - -
Cma07g00693 258 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Cma07g00693 258 SMART rav1_2 63 126 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 50 205 - -
Cma07g00693 258 CDD AP2 64 122 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 ProSiteProfiles AP2/ERF domain profile. 63 120 IPR001471 GO:0003700|GO:0006355
Cma07g00693 258 Gene3D AP2/ERF domain 63 121 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00525 Cma-Chr2:2895061 Cma07g00693 Cma-Chr7:3047127 1.90E-57 dispersed
Cma03g00965 Cma-Chr3:6844657 Cma07g00693 Cma-Chr7:3047127 6.95E-86 dispersed
Cma07g00693 Cma-Chr7:3047127 Cma05g01007 Cma-Chr5:8081047 3.21E-24 dispersed
Cma01g01826 Cma-Chr1:12101981 Cma07g00693 Cma-Chr7:3047127 3.84E-47 wgd
Cma12g00563 Cma-Chr12:2940087 Cma07g00693 Cma-Chr7:3047127 8.36E-11 wgd
Cma05g00169 Cma-Chr5:717107 Cma07g00693 Cma-Chr7:3047127 2.83E-44 wgd
Cma07g00693 Cma-Chr7:3047127 Cma09g00246 Cma-Chr9:1037948 6.98E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35396 PF00847 AP2 4.60E-11 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00693 K09286 - csv:101214481 227.254