Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00694 ATGTGGGATCTGAACGATTGTCCGGATGAGAGGAAGGAGGATGAATCGGAAGGGTGTTGGTCAGCGAAGACTTGGATTGAGGGAGAGGGGGAAGAGGAGAAGGGGAAAAGAGTGGGATCCGTTTCAAATTCCAGTTCTTCCGCGGTGCTTGTGGAGGATGGATCCGATGAAGACGCGCCCACCCCCAACGCATTACTCATGCAAATTAACGCACCCAGTCCCGTCACACGCCAGTTTTTCCCACTCCAACACCCTCAAATCTCTTCTTCCTCTTCTTCTCCTTCTCCAACTACTGCTTCTACCTTCCCTCAGGCTCACTGGGTTGGGGTCAAATTTGGGCATCCCGATCCTTTTGCCGCACCCGCTCCTCCTAATTCCATCAAGTCCACCGAGATTTCCCAGCCCATTAAGAAGAGTCGCCGCGGACCCAGGTCCCGTAGCTCTCAGTACCGTGGCGTCACTTTCTACCGGAGAACCGGCCGTTGGGAGTCACATATTTGGGATTGTGGAAAGCAGGTTTATCTGGGTGGATTCGACACGGCACATGCAGCTGCTCGTGCTTACGATAGAGCGGCCATTAAATTCCGCGGAGTGGAAGCGGACATAAACTTCAGCATCGAAGATTACGAGGAGGATTTAAAACAGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTGCGCCGACAGAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGCGTAACGCTTCACAAGTGCGGAAGATGGGAGGCCAGAATGGGCCAATTTCTTGGCAAAAAGTATGTGTATTTGGGTTTGTTTGATACGGAAATTGAAGCTGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAGGAAGCTGTCACTAATTTCGATCCCAGCATCTATCAGAATGAACTGAATCCTATAACTGATTCAACCGCCAATTTGGGAGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAACCAAAACGACACCCCAAAGCCTTCCATAGATCCCCACCATTCTTCTTCTTCTTCAGCTCCTCTATCCATGGAAGACGACTGGCAACGCACTCATGGATTTAGGCGTCCTCAGCTAAATTTGGTAGAAGAATCAAGTGGAGCAGGTGGAAATAAACATTTGAAGGCGGCAGAGGGAAGAAATAATAGGTACCTGGAGAGTGAAACGATGCAGCGTCTAAGCCAAACGCACATTCAATCTCCAGCTTCATTTGAAATGCAAAGACACGCCCAATTCAGCCGGCAGGTGGCGGGTGGGGATCACAATCACAATCACAATCACAATCCAACCCTCAATTATCAAATTCAGTTTGGGGGCAGCAGTAATGGTGGAGGAGGGCGAATAGGAAGCGATCTATCACTGTCTCTAAATGATCATAATCAAGTTGTCGATTGTTCGGGGCCATCTCAAGCTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCCTTCCAAAAATTGGCTGCACAACAATGGGTTTCACTGTCTTATGAGACCCTCCTGA 1536 48.89 MWDLNDCPDERKEDESEGCWSAKTWIEGEGEEEKGKRVGSVSNSSSSAVLVEDGSDEDAPTPNALLMQINAPSPVTRQFFPLQHPQISSSSSSPSPTTASTFPQAHWVGVKFGHPDPFAAPAPPNSIKSTEISQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEEDLKQMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYQNELNPITDSTANLGDHSLDLSLGNSSSNQNDTPKPSIDPHHSSSSSAPLSMEDDWQRTHGFRRPQLNLVEESSGAGGNKHLKAAEGRNNRYLESETMQRLSQTHIQSPASFEMQRHAQFSRQVAGGDHNHNHNHNPTLNYQIQFGGSSNGGGGRIGSDLSLSLNDHNQVVDCSGPSQALATAAASSGFAPPSKNWLHNNGFHCLMRPS 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3053919 3056462 + CmaCh07G006940.1 Cma07g00694 298009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00694 511 MobiDBLite consensus disorder prediction 317 355 - -
Cma07g00694 511 MobiDBLite consensus disorder prediction 113 149 - -
Cma07g00694 511 MobiDBLite consensus disorder prediction 1 62 - -
Cma07g00694 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 58 - -
Cma07g00694 511 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 73 509 - -
Cma07g00694 511 PRINTS Ethylene responsive element binding protein signature 242 253 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 CDD AP2 149 204 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 Pfam AP2 domain 240 289 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 Pfam AP2 domain 149 197 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 MobiDBLite consensus disorder prediction 1 38 - -
Cma07g00694 511 ProSiteProfiles AP2/ERF domain profile. 241 298 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 Gene3D AP2/ERF domain 240 299 IPR036955 GO:0003700|GO:0006355
Cma07g00694 511 Gene3D AP2/ERF domain 148 207 IPR036955 GO:0003700|GO:0006355
Cma07g00694 511 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 58 - -
Cma07g00694 511 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 73 509 - -
Cma07g00694 511 CDD AP2 240 300 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 SUPERFAMILY DNA-binding domain 240 300 IPR016177 GO:0003677
Cma07g00694 511 MobiDBLite consensus disorder prediction 317 356 - -
Cma07g00694 511 SUPERFAMILY DNA-binding domain 148 206 IPR016177 GO:0003677
Cma07g00694 511 SMART rav1_2 241 304 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 SMART rav1_2 149 211 IPR001471 GO:0003700|GO:0006355
Cma07g00694 511 ProSiteProfiles AP2/ERF domain profile. 149 205 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00966 Cma07g00694 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00523 Cma-Chr2:2878935 Cma07g00694 Cma-Chr7:3053919 6.45E-122 dispersed
Cma02g00857 Cma-Chr2:5007350 Cma07g00694 Cma-Chr7:3053919 1.01E-94 dispersed
Cma07g00694 Cma-Chr7:3053919 Cma20g00457 Cma-Chr20:2186182 3.05E-106 dispersed
Cma03g00966 Cma-Chr3:6855496 Cma07g00694 Cma-Chr7:3053919 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35397 PF00847 AP2 3.50E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00694 K09284 - csv:101214724 624.394