Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00701 ATGGAGTGGATTCGAGGGCATGAGATTGGGTGTGGGAGTTTTGCGACCATCAATTTAGCCATGCCTTCTAACACTTCTAATGCTCAGTTTCCTCCGTTAATGGCCGTTAAATCGTCTCCAGCTGTCTCCTCTGCCTCGCTAAAGAACGAGAAGCGGGTTTTGGATCTTTTGGGTGATTGCCCTCAAATTATACGGTGTTTTGGTGAGAGCTGCAGCGTCGAGAGAGGCGACGAGTTATATAATTTGTTTCTTGAGTATGCTAGTGGGGGTAGTTTGGCCGACAGAATACAGAGCCACGGTGGTTGGTTGCCGGAATTTGAGGTTCGGCGGTTCACGAGGACGATTCTCGAAGGGCTTCGGTATATTCACGAGAAAGGATTTGTTCACTGCGACGTGAAGCCTCGGAATATTCTAGTGTTTGGTGACGGCGATGCTAAAATTGCTGATTTTGGATTGTCGAAGAAGGCGGGGAAAAACAGAGCAGAAACAGGGGAAGAGGGGAAATTTCAATTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTGAACGATGACGAGTACGAGTCGCCGTGTGACATTTGGGCTGTCGGATGCGCGGTGGTGGAGATGTTGACCGGAAAACCCGCTTGGAATTTCCCAGTGGAATGCAACATCTATTCTCTGTTACTGAAAATTGGGATCGGAGAGGAATTGCCGAAAATCCCAAAATATATTTCCGAGGAAGGGAAAGATTTTCTGGGTAAATGCCTGGTGAAGGATCCCGCAAAGAGATGGACGGCTGAGATGCTTCTGAACCATCCATTTCTAGCAGACTCCGGCAGCAGCTCTGTTCCATTGACGCCCAAGGGCGAACCATTAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCAATTCACTCGCTAGAGATGGATCAGAAATTTGAGGAAGAATCAAATTGTTGGTTGGATTCGTCGTGTCCGTGGTCGTGTTCACCGACGGAGCGGCTGCTTCAGCTAGTGGACAACGGGCCAGTTGACTGGGTCATCACTGACAGTTGGGTCACCGTCAGATGA 1065 49.48 MEWIRGHEIGCGSFATINLAMPSNTSNAQFPPLMAVKSSPAVSSASLKNEKRVLDLLGDCPQIIRCFGESCSVERGDELYNLFLEYASGGSLADRIQSHGGWLPEFEVRRFTRTILEGLRYIHEKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGKNRAETGEEGKFQLRGSPLYMSPESVNDDEYESPCDIWAVGCAVVEMLTGKPAWNFPVECNIYSLLLKIGIGEELPKIPKYISEEGKDFLGKCLVKDPAKRWTAEMLLNHPFLADSGSSSVPLTPKGEPLTSPRCPFDFEDWASIHSLEMDQKFEEESNCWLDSSCPWSCSPTERLLQLVDNGPVDWVITDSWVTVR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3081457 3082521 - CmaCh07G007010.1 Cma07g00701 298016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00701 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 312 - -
Cma07g00701 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 37 IPR017441 GO:0005524
Cma07g00701 354 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00701 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Cma07g00701 354 SUPERFAMILY Protein kinase-like (PK-like) 3 292 IPR011009 -
Cma07g00701 354 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 312 - -
Cma07g00701 354 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00701 354 Gene3D Transferase(Phosphotransferase) domain 1 94 286 - -
Cma07g00701 354 CDD STKc_MAPKKK 2 270 - -
Cma07g00701 354 Gene3D Phosphorylase Kinase; domain 1 1 93 - -
Cma07g00701 354 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma07g00701 Cma20g00987 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00547 Cma-Chr3:5098993 Cma07g00701 Cma-Chr7:3081457 3.66E-53 dispersed
Cma07g00322 Cma-Chr7:1405439 Cma07g00701 Cma-Chr7:3081457 7.54E-66 dispersed
Cma07g00701 Cma-Chr7:3081457 Cma20g00987 Cma-Chr20:5356228 8.05E-133 dispersed
Cma08g00577 Cma-Chr8:3293551 Cma07g00701 Cma-Chr7:3081457 7.23E-64 dispersed
Cma17g01245 Cma-Chr17:8514570 Cma07g00701 Cma-Chr7:3081457 2.55E-13 dispersed
Cma07g00701 Cma-Chr7:3081457 Cma02g00175 Cma-Chr2:804772 4.71E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68696 PF00069 Pkinase 1.40E-53 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00701 - - bhj:120074166 593.964