Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00720 ATGCGTTGGTTGCCTAACATCTCCTTTACCCCTTCTTCCATAGTCAGGATTCCGGGCACCGCCACCGGTGGCGATTCTCCCACCAGAAGGACTGCCTCCACTCGCTCCGACGACAATAATTATTGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCAAAGGAAGCTTCGAAACCTAAGCGGACATGATCGCGCCGCTGCTTCTTTGCCTAAATGGTCCGATACTACGCCCGAGCCCGTCTCCTTCTCCAAATCGCCTAGTACCTCTGAGGATCGTGCCGTGCCGTTGCCGCTCCCGGAGCTTTCCCCTACGTTTCAGCGTCGAGAAGGGATTTCGAATTCGAATTCTGGATGTGGAGATGCGGATTGCCCTCTTCCGTCGCCCAAGGTGTTGCGTGGTCGAGGCGGGGACGACCGCGATGTAGATAGAGATAGAACTGCCCCTGCTCACAAGATTGGGGGTGGGGTCTCCAATAGCGCTCCGATTAGAAGTATATTTGATTCCCGGGAGAGGCAGAGGAAAGAAGAGCAGGTTGAGACAAGGTCGTCTAGCAGGGCGAGTCGAGATGCATTAGGACATCCGCAAAGATCGCGGAACAGTTTCAGGATTGATGTTCCCAGTAGAAGTGCTCCTACTAGTCCTTATGCAAGTCCTGCACTCAGTCCCCAAAGAAATAGTTCCATTAACCTTTCAAATATCCATCATGAGGCGGCTCCAGTCGGAAATCAAGGCTGGTCTGCACCTGAGCTGCCAAATTTCCATTATGGGACTCCAGTAGGAAATCACGTCTGGTCTGCTCCCGAGCTGCCAGCCTCAGCAATGATGCGGAGGGTTCCTCCTGCATTCTTTGATGGCTCCACTTTTAGCTCTGAGAGTTCTCCCATGCATAGCCCAAGAATGCATAGCCCAACAACACATAGCCCAAGAATGCATAGCCCAAGAATGCATAGTCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCTACAGGACCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACGTTCTGTGCATCGAGAAACTGCTGGTCCTGTGAGTGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCCTTCACCATCAACCTCAATGCCTTTACAATCAACACCAATTACACAAGCCAACACTAAAACTGAGGCAATCTCAAAGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGTAGTGTTTACGTTGCAAGCAACAGAGAAAATGGATCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGATGATCCGAAATCGGCTGAATGTATAAAGCAATTAGAACAGGAGATCAAACTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGATGTTGTTGAAGATCGATTGTATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGCTGGCCTACTTACACAGCACAAAGACTATACATCGGGACATTAAAGGTGCTAATTTGCTTGTAGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTTCTTCTGTCTGTGATGCAGAAAGATAACAACTCTGATCTTGCCCTGGCTGTTGATATTTGGAGCCTTGGGTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCAATGTTTAAGGTCATGAGAGATGCCCCAACAATACCTGAATCATTATCTTACGAAGCCAGAGAGTTCTTAAAATGCTGCTTTCAGAGAAATCCGGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGAATCCAGAAGCTCCATCTTTCTCGCTGGCCGTAGCTGGATCAAATTCGACGGATAAATGCTATAGCCCAAGTGAACAGTTTTCAAGTAAATTTGATCAGCTTTCCATGCTTCCAAGCTCACAAAATCCCAAGGGAAAATTAGCTTCCGAGAGTGTGATTGGCCCACTATCTCATTATGAAATCTCTGACTTAACAGCAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCCCTTCCACTACTGTCTCCTCCACGCTCAGTCCAAAGTATGCATTCCCCTGCAAATGCGCTCGGCTATGTAAATCAAACCAATAAAAGATGA 2325 47.66 MRWLPNISFTPSSIVRIPGTATGGDSPTRRTASTRSDDNNYWRIAWRFGASKYSRQRKLRNLSGHDRAAASLPKWSDTTPEPVSFSKSPSTSEDRAVPLPLPELSPTFQRREGISNSNSGCGDADCPLPSPKVLRGRGGDDRDVDRDRTAPAHKIGGGVSNSAPIRSIFDSRERQRKEEQVETRSSSRASRDALGHPQRSRNSFRIDVPSRSAPTSPYASPALSPQRNSSINLSNIHHEAAPVGNQGWSAPELPNFHYGTPVGNHVWSAPELPASAMMRRVPPAFFDGSTFSSESSPMHSPRMHSPTTHSPRMHSPRMHSPRGRSPHRDPRSPTGPASPLHTKISLETRSVHRETAGPVSVHPLPLPPGVPMPSPSTSMPLQSTPITQANTKTEAISKKNQWQKGKLIGRGTFGSVYVASNRENGSLCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDVVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDAPTIPESLSYEAREFLKCCFQRNPAERPTAAMLLEHPFMKNLQNPEAPSFSLAVAGSNSTDKCYSPSEQFSSKFDQLSMLPSSQNPKGKLASESVIGPLSHYEISDLTAMSRYSPRSTLEALPLLSPPRSVQSMHSPANALGYVNQTNKR 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3172737 3177519 - CmaCh07G007200.1 Cma07g00720 298035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00720 774 MobiDBLite consensus disorder prediction 751 774 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 109 123 - -
Cma07g00720 774 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 754 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 15 35 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 169 186 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 64 229 - -
Cma07g00720 774 Pfam Protein kinase domain 403 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00720 774 MobiDBLite consensus disorder prediction 289 343 - -
Cma07g00720 774 Gene3D Transferase(Phosphotransferase) domain 1 398 696 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 135 152 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 753 774 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 187 229 - -
Cma07g00720 774 MobiDBLite consensus disorder prediction 289 314 - -
Cma07g00720 774 ProSiteProfiles Protein kinase domain profile. 402 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00720 774 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 5 1 754 - -
Cma07g00720 774 SMART serkin_6 402 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00720 774 SUPERFAMILY Protein kinase-like (PK-like) 374 699 IPR011009 -
Cma07g00720 774 MobiDBLite consensus disorder prediction 77 93 - -
Cma07g00720 774 ProSitePatterns Protein kinases ATP-binding region signature. 408 431 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00720 Cma-Chr7:3172737 Cma18g01256 Cma-Chr18:9793275 2.10E-113 dispersed
Cma12g00514 Cma-Chr12:2651023 Cma07g00720 Cma-Chr7:3172737 6.35E-163 wgd
Cma03g00991 Cma-Chr3:6986502 Cma07g00720 Cma-Chr7:3172737 0 wgd
Cma05g00206 Cma-Chr5:874311 Cma07g00720 Cma-Chr7:3172737 2.35E-170 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68698 PF00069 Pkinase 1.20E-67 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00720 - - cmo:103484760 1118.22