Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00729 ATGGCCGATTTCCAGACCTCGACTCAACGAGCCAAATGGATCTTGAATCCTCACGAGCTGGTTGGCAGGTACAAAGCTGCTAACCAGAGAGCCATCGAAGCTCTGGAGAAGTTTGGAGCAACACTGATGGTGGTAGATGCTGACGGATCATTGTCCTATCCAGACCCTCTGATAAATTCAAAAGAAAATGCTGACAAACATTCCCGCCCCAAACCTTTGAGTATTGAAGAAGAGCAATTTATGCGAGTATTTTACGAGAACAAACTTCAAGAAGTATGCAACAATTTTCATTTTCCTCATAAAATCCAGGCAACGGCTCTTATATATTTTAAGAGATTCTACTTACAATGGTCTGTGATGCAACATAATCCCAAAAATGTAATGTTGACTTGCATTTATGCAGCTTGTAAGATAGAAGAAAATCATGTCTCAGCTGAGGAGCTTGGCAAGGGGATTTCACAGGATCATCAAATTATTCTCAATTATGAGATGATAGTTTATCAGAGTCTGGAATTTGATCTTATTGTTTATGCACCTTACCGATCAGTTGAAGGCTATGTACATGATATGGAGGAAGTCTTCCATGAGAATGCTGAAAGGCTTCAAATGCTGAAGGAAGCAGCATCGTTAGAGGTTGATAAAATTATGTTAACAGATGCCCCACTTCTCTTCCCCCCTGGGCAGTTAGCATTGGCTGCATTGCGCAGATCAAATGAAGTTCATGGAGTTATTGACTTTGAAAGGTACCTGGATAGTATTCTCTCTCGCCAAAATTCTGCACATATAATTTCTGAGCTCTATGAGCGTTTTAATTCAATTGACTCATGGATTAATAAATATGCATTCCCTTCAGAAAAGGACTTAAAGCACATCAACAGAAAATTAAAATCTTGCTGGGGACTGGGCTCCAATGACGAGAGTAAAAAAAGGGAGAAGAAATCAAAGCACAAATCAAAGAAGAGTTCGAATGAAATGCAGAATATGCCTTCGCACACTTAG 999 39.84 MADFQTSTQRAKWILNPHELVGRYKAANQRAIEALEKFGATLMVVDADGSLSYPDPLINSKENADKHSRPKPLSIEEEQFMRVFYENKLQEVCNNFHFPHKIQATALIYFKRFYLQWSVMQHNPKNVMLTCIYAACKIEENHVSAEELGKGISQDHQIILNYEMIVYQSLEFDLIVYAPYRSVEGYVHDMEEVFHENAERLQMLKEAASLEVDKIMLTDAPLLFPPGQLALAALRRSNEVHGVIDFERYLDSILSRQNSAHIISELYERFNSIDSWINKYAFPSEKDLKHINRKLKSCWGLGSNDESKKREKKSKHKSKKSSNEMQNMPSHT 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3216875 3223889 - CmaCh07G007290.1 Cma07g00729 298044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00729 332 Pfam Cyclin, N-terminal domain 67 174 IPR006671 -
Cma07g00729 332 SUPERFAMILY Cyclin-like 179 300 IPR036915 -
Cma07g00729 332 MobiDBLite consensus disorder prediction 298 332 - -
Cma07g00729 332 PANTHER CYCLIN-H 1 328 - -
Cma07g00729 332 Gene3D - 63 175 - -
Cma07g00729 332 CDD CYCLIN 81 167 IPR013763 -
Cma07g00729 332 Gene3D - 177 279 - -
Cma07g00729 332 SUPERFAMILY Cyclin-like 65 176 IPR036915 -
Cma07g00729 332 Pfam Cyclin C-terminal domain 179 273 IPR031658 -
Cma07g00729 332 PANTHER CYCLIN 1 328 IPR043198 GO:0006357|GO:0016538
Cma07g00729 332 SMART cyclin_7 87 168 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00729 Cma-Chr7:3216875 Cma18g00536 Cma-Chr18:3409346 1.06E-07 dispersed
Cma03g01004 Cma-Chr3:7047238 Cma07g00729 Cma-Chr7:3216875 2.06E-63 transposed
Cma03g01005 Cma-Chr3:7048664 Cma07g00729 Cma-Chr7:3216875 1.14E-17 transposed
Cma03g01003 Cma-Chr3:7043542 Cma07g00729 Cma-Chr7:3216875 4.87E-28 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00729 K06634 - csv:101220754 585.104