Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00742 ATGGAAGTGGTTCCTTTGTCCGATGTTCAGCATGTTAGGGATGACTCTGATTCTGCTCAGATTTCTGGAACTGCTTCGTTTCATGACGGACAATCAAACAACTGCGTCGATCCTCAACAACAACCAGCGGGGATGGCAAATGGTGGACTCAATGACTCATCGGTGAATGTTGAGGCCGCACAAATTAACAGCAAATGTGATGTTCAAGGGGTTCCTCAATATTTGCCTGCTTCTGGTCACTCTAGTTCGGATTCATATTCTAACTATCAGATGGATGCCCAAAAAGCATCTTCTGGTTCCCCCGACTCCGAATTTGATGATGCCAACACCGATAATTACTCCACGGAATCGTGTTTAGCATCTGAAAACTCTCGTATAGTTGTGGATACCATTGACGATGAATTGCCTAGCAGCAGCAAAGCTGAGGAGTTGTCTGTTTCGGGGCCAGAGCCAATGTGGTTGGAAGGGGATGAATCTGTGGCGCTTTGGGTGAAGTGGCGAGGGAAGTGGCAGGCTGGAATTAGATGTGCAAGGGCTGACTGGCCATTATCTACTTTAAAAGCCAAGCCCACACATGACAGGAAGAAGTATTTTGTGGTTTTTTTTCCACACACAAGGAACTATTCGTGGGCAGATGCATTGCTTGTTCGTTCTATTGAAGAATTTCCTCAGCCTATTGCATACAAGAGTCACAAAGCTGGTTTAAAATTGGTTGAAGATATAAAAGTTGCAAGGAGATTTATAATGAAAAAACTTGCTGTTGGTATGCTGAATATCATGGACCAATTTCACCTCGAGGCTCTGATTGAGAGCGCACGTGATGTAATGAATTGGAAGGAATTTGCCATGGAAGCTTCACGCTGTAATGGCTATTCTGATCTTGGTAGAATGCTTCTGAAGCTGCAGAATATGATCCTGCNATGCTTCGTAAATCCAGATTGGCTTCAAAATTCTTTGCATTCTTGGGTACAGCGATGTCAAAATGCTCAAACTGCAGAAGTTATTGAAATGCTCAAGGAGGAATTGGCTGATGCTATTTTGTGGGACAAAGTGAAATCCCACTGTGATGCGCCAGTGCAGCCTACTTTTAGTTCTGTGTGGAAAACCTGGAAGCATGAGGTTACAAAATGGTTTTCAATATATCCCACTCTTCCCATTAGCAGAGACAAGGAGCAGCAGACTGTTGAAGCTTTCTTAGCTACAGCTCTCGAAGTCAGCAGGAAGAGGCCCAAGCTTGAAATTCGTCGTGCAGAGACTCAGGCTTCATTGATGGAATCAAAGTGCTCAGATGAAGCTATGGCTCCTGATAATGATTCTGGTTTTTTCAATAACCAGACTAGTTTAAATGCTAAATTAGGATCTGAATCTCACAAAGTAGAGGTAAGGGAGATTGTTACATCAGCAGGCCCACTCAGTATTGTACCTGGTAGGTTGGCTGGGATTGTAGCTCAAACTGGAAGTTTGGATCTAGCCTCTTGCAAGGATGTGGAACTGAAACCTCATACTGAAACAGCTACAGAAAAACTCTTACATTATGGTAATAAGAACCGTCAATGCATAGCTTTTATTGAATCCAAGGGAAGGCAGTGTGTTAGATGGGCCAATGAGGGTGATGTTTACTGTTGTGTGCATTTATCCTCTCGTTTCACTGGCAACAATGATAAGAAAGAACAGACTCGTTCTGTTGAATCACCAATGTGCCAAGGTACTACTGTTCTTGGAAGTAGGTGCAAGCATCGATCTCTATTTGGCTCCTCATTCTGTAAGAAGCACAGACCAAGGAGTGAAACGAACATGGAGTCAACTTCCTATGAAAATAAGCTTATTGAGAAGCAACAGGATATTTATAGAGTAGAAGACACCCGTAATAAGGAAATAAAGTTTGACAGAGATGCTGGAAATCCCCTTGGAGTGGACGAGGGTGATGTGACCAATAATGGAAATAGCTCATCTGACAAACTTGAGCATCATGGAAAAGATTCTATTGCCTCAGAAGTTCGACACTGTATTGGTTCTTCCGAACATATTGACAGCAATCCATGTTTAGAAAGCCCAAAACGTCATTCTCTATATTGTGAAAAACACCTTCCTAGCTGGCTTAAACGTGCAAGAAATGGTAAGAGTAGAGTAATATCGAAGGAAGTATTCATGGATCTTTTAAGAGACTGTAACTCAGAAGAGCAAAAGATAAATTTGCATCAAGCCTGTGAGCTATTTTACAGGCTTTTTAAAAGTATTTTATCACTGAGGAATCCAGTTCCTATGGAGGTTCAATTTCAGTGGGCACTTTCTGAAGCTTCTAAAAACTTGGGAGTTGGGGAACAGTTTATGAAATTGGTTTGTCATGAAAAGGAAAGATTAAAAAGGTTATGGGGGTTCGATGCTGAAGGAGCACAACTTTCCTCACCTTCGATGGAAGTGCCAACTGCAGGGCCATTATTAACTTCAGGTAATTGCAATGATGGTTCGAGTATCAGATGCAAAATTTGCTCTGAAGAATTTCTTGATGATCAAGCACTCAGTACTCACTTCATGGATGGTCATAAAAAGGAAGCGCAGTGGCTGTTCAGAGGTTATGCTTGTGCCATCTGCCTTGATTCGTTCACCAATAAGAAAGTTTTAGAAACTCATGTGCAGGAGAGACACCATGCACCATTTGTTGAGCAATGCATGCTTCTGCAGTGTATTCCTTGTGGCAGCCATTTTGGGAATACGGAACAATTATGGTTACATGTAGTTGCTGTACATCCCATTGATTTTAGATTGTCAAATTCTACTAGGCAGCATAATTTTTCGTCTGGTGAGGATTCCCCAGTCAAACCCAAGGAGTGCAATATAGTTTCTAAGTCGAATGATAACAAGAATGTAGGTGGTTTACGAAAGTTTAATTGTAGGTTCTGCGGTTTGAAGTTTGATTTACTGCCTGATCTTGGTCGCCACCATCAAGCTGCGCACATGGGTCCAGGTTTAGCTAACTCCCGAACTGCAAAGAGGGGATTTCATTATTATGCTTATAAATTAAAATCTGGGAAACTTGGTCATCCTAGATTTAAGAAGACTTTAGCGGGTGCGTCAAACCGGATCAGAAACAGAACAAAAGCTAGCATGAAAAAACATATTCAAACTTCAAAGTTACTAAGCACAGGAAGCATAAACCTTCAACCTCATGAGTCCCACTTAGCAAGTTCTCGTAAATTGACCCAAGGTTCAACTGTTTCGAAGGCATTGGTTTCCGAGATTCAGAAAATAAAATTATTTCCTACCAATGTTGACATTTTGTCTATTGCTCACTCTGCCTGTTGCAAGGTCAATTTTAAAGTTCTTCTGGAACAGAAGTTTGGAGTATTACCTGAATATTTTTATCTCAAGGCAGCTGAATTATGCAGGGAAAAAGTTAACTGGTATATCAAGGGATTTGTCTGTCCTAAAGGTTGTGAGACACTTAAGGATCCTCTTTTGCATCCCAATTTGATGCCTCATCCAAATGGTTTTGGAGGCCACAAGAATGCACACACTCCTGGTCCAGTGAGTAGCAAATGGGAAGGTCATGGATGCAGTTATGCCATCGGTTCTCATCTTTCTAGCCAGCAGCTTAAGGAAACGGCCGTCATTTTATGTGAAGATATAAGCTTTGGCCAGGAATTTGTTCCTGTGGTCTGTGTAGCTGACGAAGGTCTAAGGAACTCACCTCACATATCTCTAGCTAACTCGGATAGTCAAGAAGTTGGATACTCCATGCCTTGGGAGAGTTTTACCTATATTAAGAAATCATTGCTCAATAAATCTCTTGCCATTGATACGGAGAGTTTGCAGTTCGGCTGTGCCTGTGCTCATTCACTTTGTTCGTCTGAAACATGTGATCATGTATACCTCTTTGATAGTGATTATGAAGACCCAAAGGACATTTATGGGAATCCCATGAGTCGCAGGTTCCCATATGATGAGAACGGTCGTATTATTCTGGAGGAAGGCTACCTTGTCTATGAGTGTAATGAAAGGTGCAACTGTAGTAGAACCTGTCCAAATAGAGTGTTGCAAAATGGAGTTCATGTGAAACTCGAAGTCTTCATGACAGAGACGAAGGGATGGACAGTGAGGGCTGGTGAAGCCATACTGCGTGGCACGTTTGTTTGTGAGTACATTGGGGAGGTGCTGGAGGAGCAGGAAGCAAACAGGAGACGTGACAGGTATAACTGTGAAGGCAATGGCTATTTCTTGGATGTGGATGCTCATATTAATGACATTAGCAGATTAATTGAAGGATCGGCTAGATATATTATTGATGCCACAAATTATGGAAATGTTTCGAGATTCATAAATCACAGTTGCTCACCAAATCTAGTAGCTTACCAAGTCCTTGTCGAAAGCATGGAATATCAGCGTTCACACATTGGATTGTATGCGAACCGGGATATAGCTACTGGTGAAGAGCTGACATTCAATTATCGACGCGAGCAATCGCCTGGAGGAAATGGCTGTGAATCTTCAAGTTGCTGA 4497 42.01 MEVVPLSDVQHVRDDSDSAQISGTASFHDGQSNNCVDPQQQPAGMANGGLNDSSVNVEAAQINSKCDVQGVPQYLPASGHSSSDSYSNYQMDAQKASSGSPDSEFDDANTDNYSTESCLASENSRIVVDTIDDELPSSSKAEELSVSGPEPMWLEGDESVALWVKWRGKWQAGIRCARADWPLSTLKAKPTHDRKKYFVVFFPHTRNYSWADALLVRSIEEFPQPIAYKSHKAGLKLVEDIKVARRFIMKKLAVGMLNIMDQFHLEALIESARDVMNWKEFAMEASRCNGYSDLGRMLLKLQNMILXCFVNPDWLQNSLHSWVQRCQNAQTAEVIEMLKEELADAILWDKVKSHCDAPVQPTFSSVWKTWKHEVTKWFSIYPTLPISRDKEQQTVEAFLATALEVSRKRPKLEIRRAETQASLMESKCSDEAMAPDNDSGFFNNQTSLNAKLGSESHKVEVREIVTSAGPLSIVPGRLAGIVAQTGSLDLASCKDVELKPHTETATEKLLHYGNKNRQCIAFIESKGRQCVRWANEGDVYCCVHLSSRFTGNNDKKEQTRSVESPMCQGTTVLGSRCKHRSLFGSSFCKKHRPRSETNMESTSYENKLIEKQQDIYRVEDTRNKEIKFDRDAGNPLGVDEGDVTNNGNSSSDKLEHHGKDSIASEVRHCIGSSEHIDSNPCLESPKRHSLYCEKHLPSWLKRARNGKSRVISKEVFMDLLRDCNSEEQKINLHQACELFYRLFKSILSLRNPVPMEVQFQWALSEASKNLGVGEQFMKLVCHEKERLKRLWGFDAEGAQLSSPSMEVPTAGPLLTSGNCNDGSSIRCKICSEEFLDDQALSTHFMDGHKKEAQWLFRGYACAICLDSFTNKKVLETHVQERHHAPFVEQCMLLQCIPCGSHFGNTEQLWLHVVAVHPIDFRLSNSTRQHNFSSGEDSPVKPKECNIVSKSNDNKNVGGLRKFNCRFCGLKFDLLPDLGRHHQAAHMGPGLANSRTAKRGFHYYAYKLKSGKLGHPRFKKTLAGASNRIRNRTKASMKKHIQTSKLLSTGSINLQPHESHLASSRKLTQGSTVSKALVSEIQKIKLFPTNVDILSIAHSACCKVNFKVLLEQKFGVLPEYFYLKAAELCREKVNWYIKGFVCPKGCETLKDPLLHPNLMPHPNGFGGHKNAHTPGPVSSKWEGHGCSYAIGSHLSSQQLKETAVILCEDISFGQEFVPVVCVADEGLRNSPHISLANSDSQEVGYSMPWESFTYIKKSLLNKSLAIDTESLQFGCACAHSLCSSETCDHVYLFDSDYEDPKDIYGNPMSRRFPYDENGRIILEEGYLVYECNERCNCSRTCPNRVLQNGVHVKLEVFMTETKGWTVRAGEAILRGTFVCEYIGEVLEEQEANRRRDRYNCEGNGYFLDVDAHINDISRLIEGSARYIIDATNYGNVSRFINHSCSPNLVAYQVLVESMEYQRSHIGLYANRDIATGEELTFNYRREQSPGGNGCESSSC 1498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3282381 3296989 + CmaCh07G007420.1 Cma07g00742 298057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00742 1498 Pfam Zinc finger C2H2-type, 3 repeats 861 986 IPR040689 -
Cma07g00742 1498 ProSitePatterns Zinc finger C2H2 type domain signature. 827 848 IPR013087 -
Cma07g00742 1498 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1498 - -
Cma07g00742 1498 Pfam Pre-SET motif 1230 1343 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cma07g00742 1498 MobiDBLite consensus disorder prediction 75 116 - -
Cma07g00742 1498 Pfam SET domain 1362 1482 IPR001214 GO:0005515
Cma07g00742 1498 ProSiteProfiles Pre-SET domain profile. 1272 1348 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cma07g00742 1498 SMART c2h2final6 962 985 IPR013087 -
Cma07g00742 1498 SMART c2h2final6 859 882 IPR013087 -
Cma07g00742 1498 SMART c2h2final6 825 848 IPR013087 -
Cma07g00742 1498 SMART c2h2final6 893 916 IPR013087 -
Cma07g00742 1498 MobiDBLite consensus disorder prediction 12 52 - -
Cma07g00742 1498 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 1498 - -
Cma07g00742 1498 MobiDBLite consensus disorder prediction 70 116 - -
Cma07g00742 1498 SUPERFAMILY SET domain 1199 1485 IPR046341 -
Cma07g00742 1498 ProSitePatterns Zinc finger C2H2 type domain signature. 964 985 IPR013087 -
Cma07g00742 1498 Gene3D Classic Zinc Finger 815 885 - -
Cma07g00742 1498 ProSiteProfiles SET domain profile. 1351 1483 IPR001214 GO:0005515
Cma07g00742 1498 Gene3D SET domain 1189 1488 IPR046341 -
Cma07g00742 1498 MobiDBLite consensus disorder prediction 629 658 - -
Cma07g00742 1498 SMART set_7 1351 1489 IPR001214 GO:0005515
Cma07g00742 1498 MobiDBLite consensus disorder prediction 16 52 - -
Cma07g00742 1498 SMART preset_2 1206 1335 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cma07g00742 1498 ProSitePatterns Zinc finger C2H2 type domain signature. 895 916 IPR013087 -
Cma07g00742 1498 ProSiteProfiles Zinc finger C2H2 type domain profile. 859 882 IPR013087 -
Cma07g00742 1498 ProSiteProfiles Zinc finger C2H2 type domain profile. 962 990 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00742 - - - cmax:111497014 3066.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00742 Cma-Chr7:3282381 Cma16g01105 Cma-Chr16:8499552 4.45E-34 dispersed
Cma15g01431 Cma-Chr15:9063271 Cma07g00742 Cma-Chr7:3282381 3.24E-19 dispersed
Cma07g00742 Cma-Chr7:3282381 Cma03g00206 Cma-Chr3:3162407 6.56E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g897 . . Bda04g00312 . . . Bma09g00337 . . . . Cma07g00742 Car03g00706 Car07g00729 . . . . . . . . . . . . . . . . . . . Cone10ag0558 . Lsi01g01041 . . . . . . . . Bpe06g00240 . . . . Cmo07g00763 . . . . . . . . . . . . . . . . . . . . . . Chy02g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007882 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35406 PF00856 SET 4.00E-20 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00742 Cma_Chr07 FPKM 8.51471 7.825275 11.592144 10.694637 9.078046 10.194001 9.992643 13.05484 11.665887 11.818102