Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00745 ATGGCTGAAATAAGGTTGAGTAGGTTAGAACAAGGCCAAACCAAGATTAAAAATGTGCCAATTGCTGTAACCCCAGAAGGGTTTTGGTGTTGCCCTTCTCCTGTTGTCTTCCAAAAGTCCCTCAAAAATCAACATCCTCTAAACAAGCCCAAACCTCCCTCCCCACCTCCTAAGATCCCTGTCGAGAAGAAACCAACCCTCGTGACTGATAGAAAGCTTCCAGTGCTCACGAGATCACGGTCGGCTGCTGTTTCTGATGACGACCGAAAAGGCAATGCTGATACTTCTGGCTTTAGTGCTCCAGAGGTTGTACACAGGGTATCACGGCCTAAGGTTGAAAATATGCCAAGGAAAATAGCAATTGAGTTTGGTGAGCCAGGGACTAGTAATATAAAGGTCGTTTTACTCGGGAAGCAAGGATTTTCGGTAAAGTTAAGCGTTCATAAGAACGTGTTGATGGATAATAGTACTTTTTTTGCTAATAAACTTTCTGATCAAGAAGGCTCCTCCATGGAAATTGGTGATTGCGAAGATGTTGAAATATATGTTGAAACTGTGGGATTGATGTACTGCAAAGAAATGAAGCAATGGTTGATGAAGCAAAATGTTTCTCGTGTTCTTCGAATTCTGAAGGTTGCTGAATTTCTTGGTTTTATGTCATGCATGCAATCATGTCTAGAATATTTGGAAGCAGTCCCCTGGGTTGGTGACGAAGAGGAAGAAAAGGTCGTCACGTCCATCCTACGACTTCAAAGAGAGGGCATTGGGGTGAGCCCGGTATTGAAACGAGTGTCTGCAGATGTGTCTAAGCCCCATAAAGATACTCTTTCTCATATCATTGAACTTGTTCTTAAAAGCAACGAGGAGCGAGGTCGACGTGAAATGAAACTGGTGGTACTGAGGCTTCTTAGGGAGAACCAAAGCGTCCCGAGCCACGCGAACTCAGCTGACATTTGCAATGAAATTATTTACTCTTCTTGCAGAAGCTGTTTGACATCACTATTGCTATTGTTCCAGAAGGCTACTGAAACAGAGTTTATTGACAAATCAGTAGACAGGAAAGAACCAGTGCTGAAGCAAATTACTCTAGAGGCCGATAACCTTTCGTGGTTGCTCGAGATTTTAGCTGACAGGCAAGTGGCCGATGAGTTTGCAGTAATGTGGTCGAAGCATCAGGAACTAGCAGCCCTCCACGCGAAGCTGCCGATCGTATCTCGCTACCAAGTTAGCTGCATAACAGCAAGGCTATTTGTTGGCATTGGCAAAGGAGAGCTGTTACCAGCAAAGGATACACGTAAATTACTATTACATACATGGTTAGAGCCATTAATCAATGATTATAGCTGGTTAAAACATGGTTGTGGGTCGTTTGATCGAAAAGTCGTGGAAGAAGGAATCGGTCGGACGATCCTCACTCTCCCACTCGAGGATCAGCAAAGCATTTTGCTGACTTGGTTGGGCAGTTTTCTGAAGGTTGGAGATAGTTGCCCAAATCTCCAAAGAGCATTCGAGGTTTGGTGGCGTCGGACCTTTGTACGACCTTATGTCGAGACACAAGGAAGCAACCCAATCACCCCCCAGTTGGAGCCTTGA 1593 44.63 MAEIRLSRLEQGQTKIKNVPIAVTPEGFWCCPSPVVFQKSLKNQHPLNKPKPPSPPPKIPVEKKPTLVTDRKLPVLTRSRSAAVSDDDRKGNADTSGFSAPEVVHRVSRPKVENMPRKIAIEFGEPGTSNIKVVLLGKQGFSVKLSVHKNVLMDNSTFFANKLSDQEGSSMEIGDCEDVEIYVETVGLMYCKEMKQWLMKQNVSRVLRILKVAEFLGFMSCMQSCLEYLEAVPWVGDEEEEKVVTSILRLQREGIGVSPVLKRVSADVSKPHKDTLSHIIELVLKSNEERGRREMKLVVLRLLRENQSVPSHANSADICNEIIYSSCRSCLTSLLLLFQKATETEFIDKSVDRKEPVLKQITLEADNLSWLLEILADRQVADEFAVMWSKHQELAALHAKLPIVSRYQVSCITARLFVGIGKGELLPAKDTRKLLLHTWLEPLINDYSWLKHGCGSFDRKVVEEGIGRTILTLPLEDQQSILLTWLGSFLKVGDSCPNLQRAFEVWWRRTFVRPYVETQGSNPITPQLEP 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3301330 3303888 + CmaCh07G007450.1 Cma07g00745 298060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00745 530 Gene3D Potassium Channel Kv1.1; Chain A 125 232 IPR011333 -
Cma07g00745 530 SUPERFAMILY POZ domain 143 230 IPR011333 -
Cma07g00745 530 MobiDBLite consensus disorder prediction 43 100 - -
Cma07g00745 530 PANTHER BTB/POZ DOMAIN PROTEIN 1 522 - -
Cma07g00745 530 PANTHER OSJNBA0011J08.25 PROTEIN-RELATED 1 522 IPR038920 -
Cma07g00745 530 MobiDBLite consensus disorder prediction 48 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00745 - - - bhj:120073152 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01096 Cma-Chr3:7508936 Cma07g00745 Cma-Chr7:3301330 9.99E-59 dispersed
Cma07g00745 Cma-Chr7:3301330 Cma15g01243 Cma-Chr15:7900517 8.37E-101 dispersed
Cma03g01026 Cma-Chr3:7149998 Cma07g00745 Cma-Chr7:3301330 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g899 Blo04g00957 . Bda04g00314 . . . Bma09g00339 . . . . Cma07g00745 . Car07g00732 . . . . . . . . . . . . . . . . . . . Cone6ag1355 . Lsi01g01042 . . . . . . . . Bpe06g00241 . . . . Cmo07g00765 . . . . . . . . . . . . . . . . . . . . . . Chy02g00962 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004743 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00745 Cma_Chr07 FPKM 15.170579 17.875284 19.45648 19.873558 41.001682 42.683151 42.322117 15.735953 14.483621 14.048768