Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00746 ATGGGAATCGCTAAAGGTCCTTTAATTTTGTCTAATAAGCCAACCAATTGTGCCAATTCTTCTATGTCCCACGATTATCATCCTCATCAAGGAATCTTAGCCTTCTCTAATCCCTTAGACAAATCCAATTCCCCCTCTCTCCCTCATCAGATCCGCCGTGATAAGCTTCGAGTCGACTCCTTCTCCTCCGATCCACTCCCCCCGCCGCCCCCTACGGTGGCTGGAATCGACGAACAGCTCCACCATCACCATCACCATCACCATCACCAACAGCATCTTCACCATGTCTATGCTACCTCACCTACTGCGGGGACCATGTTATCAGACATGTTCAATTACCCTCCAACTCCCTCCGCCACTCCCGCCTCCGTTGAATTCTCCGACAATTTTCGAACTTTACGCCAACCCAACTCGGCTTCTGCCATGCAGCTTTTCTTGATGAACCCTCCTCCTCCGCCGCCACCACCACCACCACGATCGCCCTCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAATCTACCGTCGGGTTCTCTTCAGGGTTTCGAAAGTGGCGGCGTTGGAGATCAGACGGGGTTTGGCCAATTCGCCGTCGCTGAAAGTCAAGGGCTTTCTCTCTCACTTCACTCGTCGTCGTTACAACACTTGGAGGACGTCGGAGCCGGTGCGAAAGCGGATGAATTTCGAATTAGAGATGGTGGGATGTTGTATAATTACAACAACAACAATAATCAAGTCCATGGCGGAGGAGGAAATGGATCAAACTCCTCAATTTTGCAATATTCTTTTAGGAATAATTCAGAGAATTCTCCTCATAGCTTTCAAATGAATCCAAACCATCAAGTTCAAATTGGATTTGGGTCTTCTTTAGGAGTTGTAAATCTTTTGAGGAATTCAAAATATGTCAAAGCCGCTCAAGAATTGCTCGAGGAATTTTGCAGCGTTGGTCGGGTTCAGCTCAAGAAAACCAAGTCCAATATGAAGCAAAGCCACAACAATCCCGAAACCGCAGCAGGCGGCGGCGCGTCTTCGTCGTCCTCAAAGGATCATCCTCCCTTATCGGCTACTGATAGAATCGAGCATCAGCGGAGGAAGGTCGAACGCAGGTACAACTTATACCGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGGTTCGGAGCTGCAGCGCCATACACAACGCTAACGCAGAAGGCGATGTCTAGACACTTCCGGTGCTTAAAAGACGCCATAACCGAGCAGTTAAAGCAGAGCTACGAGGCATTGGGGGAGAAAGGTGGGAATGGAGGCTCGGGAATAACTAAAGGAGAGACACCAAGATTGAAGCTTCTGGAACAAAGCCTCCGCCAGCAAAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGGCCTCAGCGTGGCCTCCCTGAACGATCTGTCAACATCCTTAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTCCTGTTAGCTCGGCAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAAATTGAAGGCAAGGACGAAACAGATCACTCTCATCAACAACAGCCATCAAAAGACGACGACGACACCACAGACAATAAGATCCAAAATAGTGCCATAAATGCACAAAATCCAACTCCCACCACCGCCACCACTTCCTCCGTTCCACCGCCGTCTACCACCATTGCAGAGGAAGGTGCGGCGGGGTTCACGGCGACCCATGATCAATTCTCGGAGCTGCATGATGTGTGGCGTCATGGAAGCGGACAACATTATGGGACCATGTCTGAGGATGCTAGAGCAGCGACTGACGTAAGTAATGGTCCAACACTTATAAGGTTTGGAACCAGTGGTACGACAACCGGTGACGTGTCACTCACTTTAGGTCTCCGCCACGCCGGAAACACTTCCGCCGCCACTATGGATAACCCTTCTTTCTCGCTCAGAGACTTTGGTCACTCTTAG 2058 49.81 MGIAKGPLILSNKPTNCANSSMSHDYHPHQGILAFSNPLDKSNSPSLPHQIRRDKLRVDSFSSDPLPPPPPTVAGIDEQLHHHHHHHHHQQHLHHVYATSPTAGTMLSDMFNYPPTPSATPASVEFSDNFRTLRQPNSASAMQLFLMNPPPPPPPPPPRSPSPPSTSSTLHMLLPNLPSGSLQGFESGGVGDQTGFGQFAVAESQGLSLSLHSSSLQHLEDVGAGAKADEFRIRDGGMLYNYNNNNNQVHGGGGNGSNSSILQYSFRNNSENSPHSFQMNPNHQVQIGFGSSLGVVNLLRNSKYVKAAQELLEEFCSVGRVQLKKTKSNMKQSHNNPETAAGGGASSSSSKDHPPLSATDRIEHQRRKVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQIEGKDETDHSHQQQPSKDDDDTTDNKIQNSAINAQNPTPTTATTSSVPPPSTTIAEEGAAGFTATHDQFSELHDVWRHGSGQHYGTMSEDARAATDVSNGPTLIRFGTSGTTTGDVSLTLGLRHAGNTSAATMDNPSFSLRDFGHS 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3306916 3310652 - CmaCh07G007460.1 Cma07g00746 298061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00746 685 Pfam Homeobox KN domain 489 528 IPR008422 GO:0003677|GO:0006355
Cma07g00746 685 SMART prehox3 293 420 IPR006563 -
Cma07g00746 685 MobiDBLite consensus disorder prediction 543 594 - -
Cma07g00746 685 Coils Coil 359 379 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 325 355 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 325 365 - -
Cma07g00746 685 Gene3D - 475 537 - -
Cma07g00746 685 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 88 669 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 146 164 - -
Cma07g00746 685 CDD homeodomain 472 533 IPR001356 GO:0003677
Cma07g00746 685 MobiDBLite consensus disorder prediction 565 591 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 143 189 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 59 95 - -
Cma07g00746 685 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 88 669 - -
Cma07g00746 685 MobiDBLite consensus disorder prediction 165 188 - -
Cma07g00746 685 Pfam Associated with HOX 299 419 IPR006563 -
Cma07g00746 685 SUPERFAMILY Homeodomain-like 473 540 IPR009057 -
Cma07g00746 685 SMART HOX_1 472 536 IPR001356 GO:0003677
Cma07g00746 685 MobiDBLite consensus disorder prediction 543 564 - -
Cma07g00746 685 ProSiteProfiles 'Homeobox' domain profile. 469 532 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00561 Cma-Chr2:3177948 Cma07g00746 Cma-Chr7:3306916 1.43E-149 dispersed
Cma07g00746 Cma-Chr7:3306916 Cma20g01145 Cma-Chr20:9080279 4.96E-170 dispersed
Cma03g01027 Cma-Chr3:7153378 Cma07g00746 Cma-Chr7:3306916 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35407 PF07526 POX 1.10E-37 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00746 - - csv:101202767 889.412