Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00746 | ATGGGAATCGCTAAAGGTCCTTTAATTTTGTCTAATAAGCCAACCAATTGTGCCAATTCTTCTATGTCCCACGATTATCATCCTCATCAAGGAATCTTAGCCTTCTCTAATCCCTTAGACAAATCCAATTCCCCCTCTCTCCCTCATCAGATCCGCCGTGATAAGCTTCGAGTCGACTCCTTCTCCTCCGATCCACTCCCCCCGCCGCCCCCTACGGTGGCTGGAATCGACGAACAGCTCCACCATCACCATCACCATCACCATCACCAACAGCATCTTCACCATGTCTATGCTACCTCACCTACTGCGGGGACCATGTTATCAGACATGTTCAATTACCCTCCAACTCCCTCCGCCACTCCCGCCTCCGTTGAATTCTCCGACAATTTTCGAACTTTACGCCAACCCAACTCGGCTTCTGCCATGCAGCTTTTCTTGATGAACCCTCCTCCTCCGCCGCCACCACCACCACCACGATCGCCCTCGCCACCTTCTACCTCCTCCACTCTCCACATGCTCCTCCCGAATCTACCGTCGGGTTCTCTTCAGGGTTTCGAAAGTGGCGGCGTTGGAGATCAGACGGGGTTTGGCCAATTCGCCGTCGCTGAAAGTCAAGGGCTTTCTCTCTCACTTCACTCGTCGTCGTTACAACACTTGGAGGACGTCGGAGCCGGTGCGAAAGCGGATGAATTTCGAATTAGAGATGGTGGGATGTTGTATAATTACAACAACAACAATAATCAAGTCCATGGCGGAGGAGGAAATGGATCAAACTCCTCAATTTTGCAATATTCTTTTAGGAATAATTCAGAGAATTCTCCTCATAGCTTTCAAATGAATCCAAACCATCAAGTTCAAATTGGATTTGGGTCTTCTTTAGGAGTTGTAAATCTTTTGAGGAATTCAAAATATGTCAAAGCCGCTCAAGAATTGCTCGAGGAATTTTGCAGCGTTGGTCGGGTTCAGCTCAAGAAAACCAAGTCCAATATGAAGCAAAGCCACAACAATCCCGAAACCGCAGCAGGCGGCGGCGCGTCTTCGTCGTCCTCAAAGGATCATCCTCCCTTATCGGCTACTGATAGAATCGAGCATCAGCGGAGGAAGGTCGAACGCAGGTACAACTTATACCGCGAGCAAATGCAAATGGTGGTGAACTCATTTGACTTGGTGATGGGGTTCGGAGCTGCAGCGCCATACACAACGCTAACGCAGAAGGCGATGTCTAGACACTTCCGGTGCTTAAAAGACGCCATAACCGAGCAGTTAAAGCAGAGCTACGAGGCATTGGGGGAGAAAGGTGGGAATGGAGGCTCGGGAATAACTAAAGGAGAGACACCAAGATTGAAGCTTCTGGAACAAAGCCTCCGCCAGCAAAGGGCTTTCCATCAAATGGGTATGATGGAACAAGAAGCTTGGAGGCCTCAGCGTGGCCTCCCTGAACGATCTGTCAACATCCTTAGAGCTTGGCTGTTCGAGCATTTTCTTCACCCGTACCCCAGCGACGCAGACAAGCTCCTGTTAGCTCGGCAGACTGGTTTGTCCAGAAATCAGGTTTCAAATTGGTTCATTAATGCAAGAGTTCGTTTGTGGAAACCCATGGTAGAAGAAATGTACCAAATTGAAGGCAAGGACGAAACAGATCACTCTCATCAACAACAGCCATCAAAAGACGACGACGACACCACAGACAATAAGATCCAAAATAGTGCCATAAATGCACAAAATCCAACTCCCACCACCGCCACCACTTCCTCCGTTCCACCGCCGTCTACCACCATTGCAGAGGAAGGTGCGGCGGGGTTCACGGCGACCCATGATCAATTCTCGGAGCTGCATGATGTGTGGCGTCATGGAAGCGGACAACATTATGGGACCATGTCTGAGGATGCTAGAGCAGCGACTGACGTAAGTAATGGTCCAACACTTATAAGGTTTGGAACCAGTGGTACGACAACCGGTGACGTGTCACTCACTTTAGGTCTCCGCCACGCCGGAAACACTTCCGCCGCCACTATGGATAACCCTTCTTTCTCGCTCAGAGACTTTGGTCACTCTTAG | 2058 | 49.81 | MGIAKGPLILSNKPTNCANSSMSHDYHPHQGILAFSNPLDKSNSPSLPHQIRRDKLRVDSFSSDPLPPPPPTVAGIDEQLHHHHHHHHHQQHLHHVYATSPTAGTMLSDMFNYPPTPSATPASVEFSDNFRTLRQPNSASAMQLFLMNPPPPPPPPPPRSPSPPSTSSTLHMLLPNLPSGSLQGFESGGVGDQTGFGQFAVAESQGLSLSLHSSSLQHLEDVGAGAKADEFRIRDGGMLYNYNNNNNQVHGGGGNGSNSSILQYSFRNNSENSPHSFQMNPNHQVQIGFGSSLGVVNLLRNSKYVKAAQELLEEFCSVGRVQLKKTKSNMKQSHNNPETAAGGGASSSSSKDHPPLSATDRIEHQRRKVERRYNLYREQMQMVVNSFDLVMGFGAAAPYTTLTQKAMSRHFRCLKDAITEQLKQSYEALGEKGGNGGSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKLLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQIEGKDETDHSHQQQPSKDDDDTTDNKIQNSAINAQNPTPTTATTSSVPPPSTTIAEEGAAGFTATHDQFSELHDVWRHGSGQHYGTMSEDARAATDVSNGPTLIRFGTSGTTTGDVSLTLGLRHAGNTSAATMDNPSFSLRDFGHS | 685 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3306916 | 3310652 | - | CmaCh07G007460.1 | Cma07g00746 | 298061 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00746 | 685 | Pfam | Homeobox KN domain | 489 | 528 | IPR008422 | GO:0003677|GO:0006355 | |
Cma07g00746 | 685 | SMART | prehox3 | 293 | 420 | IPR006563 | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 543 | 594 | - | - | |
Cma07g00746 | 685 | Coils | Coil | 359 | 379 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 325 | 355 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 325 | 365 | - | - | |
Cma07g00746 | 685 | Gene3D | - | 475 | 537 | - | - | |
Cma07g00746 | 685 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 2 | 88 | 669 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 146 | 164 | - | - | |
Cma07g00746 | 685 | CDD | homeodomain | 472 | 533 | IPR001356 | GO:0003677 | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 565 | 591 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 143 | 189 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 59 | 95 | - | - | |
Cma07g00746 | 685 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 88 | 669 | - | - | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 165 | 188 | - | - | |
Cma07g00746 | 685 | Pfam | Associated with HOX | 299 | 419 | IPR006563 | - | |
Cma07g00746 | 685 | SUPERFAMILY | Homeodomain-like | 473 | 540 | IPR009057 | - | |
Cma07g00746 | 685 | SMART | HOX_1 | 472 | 536 | IPR001356 | GO:0003677 | |
Cma07g00746 | 685 | MobiDBLite | consensus disorder prediction | 543 | 564 | - | - | |
Cma07g00746 | 685 | ProSiteProfiles | 'Homeobox' domain profile. | 469 | 532 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00561 | Cma-Chr2:3177948 | Cma07g00746 | Cma-Chr7:3306916 | 1.43E-149 | dispersed | |
Cma07g00746 | Cma-Chr7:3306916 | Cma20g01145 | Cma-Chr20:9080279 | 4.96E-170 | dispersed | |
Cma03g01027 | Cma-Chr3:7153378 | Cma07g00746 | Cma-Chr7:3306916 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35407 | PF07526 | POX | 1.10E-37 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00746 | - | - | csv:101202767 | 889.412 |