Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00747 ATGGATTGGCAACTGTTTTCTTCTGCCACGTGTTCCAAATGTAGAGCAAACAAGGTTGATATCATTTTTGACACTATGAAGTGGACAATCAATATCGATACGACCTCAGGTGACATGGAAGAAGCTGATCAAGTGGAAGTTGATTATGTTAAGGCATTATCACTCTCACAAATGGAATTTGAAAATGAACAAGATTTGATCATTGAGAGAAAGATAAAGGAAACCCTCAATGTCCAAACTGAAGAGGATGAGCAGCTTGCCAATGCAATGCAACTAAGCTTAGTCATGGCGTCTTCTAAAGCTGTTTCTTCTGCATTCAAGATTATCTGTGCTGGATGCAACAATGAGATAAGTCGACGCGAAAATCGTTTCGATTGTAATGGTATTGTTTGGCATGTTAAATGTCTCCAATGCCATGCTTGCATACAAATGATCAAAGATGACCAGTTCTACATGGTCGAAAATCGACCTTACCACAAATCTTGCGCTAGGAATAAGAGTCATCTCAAATGCTATGTATGCAATGACTTTATCCCATATATTGGTAAAGAGGTCGAATATGGAGAGCATCCTTTTTGGGCACAAAAGTACTGCCCGTCCCATGAAGATGATGGAACTTCCAAATGTGCTAGCTGTGAAAGGTTGAAGCCAAAAGGACGGGAGTACATTTTACTCCAAGATGGCAGAAGTTTGTGTGTAGAGTGTTCCAGCTTCATGATCCTGGACACCAACGAGTGTCAACCTCTTTTCCGTGAGATACAAGAGTACTTCACAAGTTTAGACATGAAACTGGACCAAAAAATTCCTTTGTTGTTGGTCGAAAGGGAAGCATTGAATGAGGCCATGAAAGGGGAAAGGAATGGACACCACCATTTATCTGAAACTCGAGGACTCTGCGTGTCAGAAGAGCAAATCATTCCCGTTATTCATAAGAGGAAACATACGGGAAGAAATTCAACCTTGAACACACAGCCTTTCAGACTTGTTCGTAGTTGTGAAGTTAATGCTATACTCATTCTATATGGTCTTCCCAGGCTATTGACAGGATCCATTCTAGCACATGAGATGATGCATGCATGGCTTAGACTTCAAGGCTATCCCAATTTAAAACCCGAAATCGAAGAAGGAATCTGCCAAGTCCTCGCTCACATGTGGCTGAAATCCAAGATCAATGTGGGATTTGAAGCCGCCATGATTGCTAGCTCGTCTTCTACCCAACAACCTCTACGTTCAAACAAGCAGCTGAGTAAAATCGAGCAGAAACTCGGCGAATGCTTCGTTCGCCAAATCGAGCTGGATAACTCCGAAGCTTATGGAGATGGATTCAGGGTGGGAGAACAGGCTGTTTCTCAGTATGGCTTAAAGGAAACTCTTCATCACATCAAACACACTCGAACCTTTCCATTTTAA 1410 41.91 MDWQLFSSATCSKCRANKVDIIFDTMKWTINIDTTSGDMEEADQVEVDYVKALSLSQMEFENEQDLIIERKIKETLNVQTEEDEQLANAMQLSLVMASSKAVSSAFKIICAGCNNEISRRENRFDCNGIVWHVKCLQCHACIQMIKDDQFYMVENRPYHKSCARNKSHLKCYVCNDFIPYIGKEVEYGEHPFWAQKYCPSHEDDGTSKCASCERLKPKGREYILLQDGRSLCVECSSFMILDTNECQPLFREIQEYFTSLDMKLDQKIPLLLVEREALNEAMKGERNGHHHLSETRGLCVSEEQIIPVIHKRKHTGRNSTLNTQPFRLVRSCEVNAILILYGLPRLLTGSILAHEMMHAWLRLQGYPNLKPEIEEGICQVLAHMWLKSKINVGFEAAMIASSSSTQQPLRSNKQLSKIEQKLGECFVRQIELDNSEAYGDGFRVGEQAVSQYGLKETLHHIKHTRTFPF 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3316436 3322784 + CmaCh07G007470.1 Cma07g00747 298062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00747 469 SMART lim_4 109 162 IPR001781 -
Cma07g00747 469 Pfam LIM domain 110 162 IPR001781 -
Cma07g00747 469 Gene3D Cysteine Rich Protein 95 168 - -
Cma07g00747 469 CDD LIM_DA1 110 162 - -
Cma07g00747 469 PANTHER PROTEIN DA1-RELATED 1 56 468 - -
Cma07g00747 469 ProSitePatterns LIM zinc-binding domain signature. 110 145 IPR001781 -
Cma07g00747 469 ProSiteProfiles LIM domain profile. 108 169 IPR001781 -
Cma07g00747 469 PANTHER PROTEIN DA1-RELATED 2 56 468 IPR045218 -
Cma07g00747 469 Pfam Protein DA1 260 463 IPR022087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00747 - - - csv:101204053 617.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00747 Cma-Chr7:3316436 Cma20g01153 Cma-Chr20:9114577 1.26E-152 dispersed
Cma02g00550 Cma-Chr2:3054865 Cma07g00747 Cma-Chr7:3316436 1.37E-137 wgd
Cma03g01028 Cma-Chr3:7160461 Cma07g00747 Cma-Chr7:3316436 7.54E-134 wgd
Cma05g00218 Cma-Chr5:921801 Cma07g00747 Cma-Chr7:3316436 2.58E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g902 . . . . . . . . . . . Cma07g00747 . Car07g00734 . . . . . . . . . . . . . . . . . . . . . Lsi01g01044 . . . . . . . . . . . . . Cmo07g00768 . . . . . . . . . . . . . . . . . . . . . . Chy02g00964 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010044 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 7 2 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35408 PF12315 DA1-like 5.40E-86 CL0126 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00747 Cma_Chr07 FPKM 14.418483 18.162596 19.039429 18.301868 10.01815 13.813789 10.663638 11.493461 11.691796 11.605614