Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00748 ATGGGTTCCTTCAAATTCCATTTCTTCGTCGCCTCTCTGTTTTGCTTCTTCTCTTTAATTGCTTCTCAGCAACCCTACACCGGACCGACCACCGCTGATTGTGACATCCCCCACAATTCAACCGGAAATCTGGGTTACTTCTGCAACACCCCCAATCGGAGCTGCCAATCCTTCCTCACCTTCAGATCCCGCTCTCCGTTTAACTCTGTGTCTTCCATCTCTGCTCTCTTGGGTTCCGACCCGTCGGAGATCTCTCGGGTCAATTCCGTCGACGCTTCCGCCATTTTCCCGCCGGAGAAATTGGTGCTTGTTCCAACCCGTTGTTCCTGTTCCGGTCAGTTTCTTCAGGCTAATGTTTCTTTTACAACACAACGGGGAGATACTTATTTAGAGATTGCCAATGATACCCTGCAAGGCCTCTCGACTTGCCAATCTCTTATAGCTCAGAACCCAAATCTTAATGCCACGAGTATAAAAGGTGGGGAAAGGATTCGTGTTCCTCTTAGATGTGCTTGTCCGACCAAGAATCAAACCGATATGGGTTTCAATTACCTTTTGAGTTACTTAATTTTATTCGATGATATTGTTTCTGGAATCGCTGAAAGATTTGAATCGTTTGGTGCGGATAATGGGATTATTCTTGCAGCCAACGAGCTTGGAGAAGAATCCAACATCAACCCTTTTACGACGCTTTTAATTCCCCTTAAAACTGAGCCGTCGAGCTCTGGAATGAAAGAGCCTTCGTTGTCATCGCCGCCGCCACCGCCGCCATCTCCAGCCACTCCACCACCTCCAAGCTCCAAAAAAACGTGGGTTTATGTTGTCGTCGCCGTTGTAGGAGGCGTTGTTTTAGCAGCTGCAATTGGGGGTGTCGTTTTCTTTGTGTGTGTGAGGAAAAAGAAGAAGAAAACTGAGTATTCAGCTACTGAAATTGATAGCTTTACATCATATGAGAAGCCATCAGAGAAAAAAATGGATGGAGAATCATCTTCTATCACATTGGAGAGTATTTCCAGCATTGCGCAATCTGTCAAAGTTTACAGTTTCAAAGAACTACAAGCTGCAACTGATAATTTCAATTCAACCCATTTGATCAAAGGATCTGTTTATCATGGCACAATCAATGGAGACTCAGCAGCTATTAAGAAGATGAACGGAGACGTGTCGAAACAAGTCAATTTACTTAACAAGACGAACCATTCGAACCTGATTCGTCTTTCGGGTGTCTGTTTCGACGAAGGGCATTGGTATCTTGTTTATGAATATGCTGCTAAAGGTCCCTTGAGTGACTGGATTGTTTCAAATGGTAGTAAGAATGACAGGTTCTTGAGCTGGACGCAGAGGATACAGATCGCTGTGGATGTCGCGACGGGGCTTAATTATCTCCATAGTTTCACAAATCCGCCTCATGTTCATAAGGATTTGAAGATGGATAACATACTTCTTGACAGTGATTTCCGAGGTAAGATCTCAAACTTCAGCCTAGCAAGATCGGCAGGATGGGAAGAAGGCGAGTTTACACTGACAATGCACATCGTTGGAACGAGAGGTTACATGGCTCCTGAGTATCTCGAGAATGGTTTGGTCTCTACAAAGCTCGATGTTTATTCATTCGGTGTTTTGATGATTGAAATGCTCACTGGGAAAGAGGTATCAGAGTTGTACAGAGAGGAGAATTTGCAATTGGGTGACGTTCTTAAGAAGGTGCTTGATGAGGAAGATGGGAAGGAGTATTTAAGCCATTTGATGGATTCTTCATTAGAAGGTAACTTTTCGATCGAGCTTGCTATTCTCGTGATGAGTATTGTCGATAAGTGCTTGAACAAAGATCCATCTCAACGCCCATCGATGGACGAGATTGTTCAATCGCTTGGTAGAATTTTAAGCAGTTCTGTATCATGGGAATTGTCGAACACTTCTGTGAGACAGCCAAATTCAGAACAAAGCTAA 1950 44.05 MGSFKFHFFVASLFCFFSLIASQQPYTGPTTADCDIPHNSTGNLGYFCNTPNRSCQSFLTFRSRSPFNSVSSISALLGSDPSEISRVNSVDASAIFPPEKLVLVPTRCSCSGQFLQANVSFTTQRGDTYLEIANDTLQGLSTCQSLIAQNPNLNATSIKGGERIRVPLRCACPTKNQTDMGFNYLLSYLILFDDIVSGIAERFESFGADNGIILAANELGEESNINPFTTLLIPLKTEPSSSGMKEPSLSSPPPPPPSPATPPPPSSKKTWVYVVVAVVGGVVLAAAIGGVVFFVCVRKKKKKTEYSATEIDSFTSYEKPSEKKMDGESSSITLESISSIAQSVKVYSFKELQAATDNFNSTHLIKGSVYHGTINGDSAAIKKMNGDVSKQVNLLNKTNHSNLIRLSGVCFDEGHWYLVYEYAAKGPLSDWIVSNGSKNDRFLSWTQRIQIAVDVATGLNYLHSFTNPPHVHKDLKMDNILLDSDFRGKISNFSLARSAGWEEGEFTLTMHIVGTRGYMAPEYLENGLVSTKLDVYSFGVLMIEMLTGKEVSELYREENLQLGDVLKKVLDEEDGKEYLSHLMDSSLEGNFSIELAILVMSIVDKCLNKDPSQRPSMDEIVQSLGRILSSSVSWELSNTSVRQPNSEQS 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3322708 3324657 - CmaCh07G007480.1 Cma07g00748 298063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00748 649 SUPERFAMILY Protein kinase-like (PK-like) 333 624 IPR011009 -
Cma07g00748 649 ProSiteProfiles LysM domain profile. 186 233 IPR018392 -
Cma07g00748 649 ProSiteProfiles Protein kinase domain profile. 282 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00748 649 Pfam LysM domain 194 234 IPR018392 -
Cma07g00748 649 Gene3D Transferase(Phosphotransferase) domain 1 424 642 - -
Cma07g00748 649 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 638 - -
Cma07g00748 649 PANTHER LYSM DOMAIN RECEPTOR-LIKE KINASE 4 4 638 - -
Cma07g00748 649 SMART serkin_6 359 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma07g00748 649 MobiDBLite consensus disorder prediction 248 265 - -
Cma07g00748 649 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Cma07g00748 649 MobiDBLite consensus disorder prediction 238 265 - -
Cma07g00748 649 Pfam Protein kinase domain 375 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00748 - - - cmax:111497016 1209.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02357 Cma-Chr4:16348290 Cma07g00748 Cma-Chr7:3322708 3.16E-09 dispersed
Cma07g00748 Cma-Chr7:3322708 Cma14g01290 Cma-Chr14:10198619 5.82E-73 dispersed
Cma07g00748 Cma-Chr7:3322708 Cma07g00750 Cma-Chr7:3333507 4.70E-72 proximal
Cma04g02964 Cma-Chr4:19475401 Cma07g00748 Cma-Chr7:3322708 2.93E-82 transposed
Cma10g00816 Cma-Chr10:3806363 Cma07g00748 Cma-Chr7:3322708 4.33E-21 transposed
Cma12g00499 Cma-Chr12:2584854 Cma07g00748 Cma-Chr7:3322708 9.18E-110 wgd
Cma02g00549 Cma-Chr2:3052164 Cma07g00748 Cma-Chr7:3322708 1.30E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g904 . . . . . . . . . . . Cma07g00748 . Car07g00735 . . . . . . . . . . . . . . . . . . . Cone6ag1353 . Lsi01g01045 . . . . . . Bda14g01210 . . . . . . Cmo07g00769 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009934 1 1 0 1 0 2 1 1 2 1 1 2 1 1 0 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68700 PF00069 Pkinase 1.20E-39 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00748 Cma_Chr07 FPKM 10.64315 11.062718 7.745686 8.018337 7.222888 6.384794 7.810224 5.193072 5.710949 5.813172