Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00752 ATGGCGAGCGAGTTTGGAGAATCAACAAGCGTGCCAAATCAAAACCCCTCTTCGTCCAGTAACAATGATATTGGCGATTTCGAATGCAATATTTGTTTCGAGTTAGCTCAAGATCCAATTATCACTCTCTGTGGCCATCTCTTTTGCTGGCCTTGTCTGTATAGATGGCTGCATTATCACTCACAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTATTCAGCGGGAGAAATTGATTCCTCTTTATGGTAGGGGAAAGGTACCATCTGACCCGAGATTGAAGAGATATTCTGGTATGGATGTTCCGAGTCGCCCTGCTGGTCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGGTTTGGATTCACTGGTGGCTTTATGCCAATGTCAACAGCAAGGATTGGCAACTTCACCTTGGCGACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAATATCCAGTTTCATGGATTTCCTGATGCTACAGTTTATGGGACTACTTCTGGTTACCCCCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCAGCAACCGACGAGTCAAGGTCAGCATGCTGATAATGTACTCAAAAACCTCCTTTTACTCGTTGGTGTCTTTGTGATTCTTGCCTTGCTTTGGTGGTAG 675 45.19 MASEFGESTSVPNQNPSSSSNNDIGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHYHSQCQECPVCKALIQREKLIPLYGRGKVPSDPRLKRYSGMDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMSTARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPPYAFNTFHGGHGHHFQQPTSQGQHADNVLKNLLLLVGVFVILALLWW 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3339684 3340358 - CmaCh07G007520.1 Cma07g00752 298067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00752 224 MobiDBLite consensus disorder prediction 1 20 - -
Cma07g00752 224 Pfam Zinc finger, C3HC4 type (RING finger) 27 74 - -
Cma07g00752 224 ProSiteProfiles Zinc finger RING-type profile. 29 70 IPR001841 -
Cma07g00752 224 PANTHER RING ZINC FINGER PROTEIN-RELATED 2 223 - -
Cma07g00752 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Cma07g00752 224 SMART ring_2 29 69 IPR001841 -
Cma07g00752 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cma07g00752 224 SUPERFAMILY RING/U-box 25 82 - -
Cma07g00752 224 CDD RING-HC_AtRMA_like 27 71 - -
Cma07g00752 224 MobiDBLite consensus disorder prediction 93 114 - -
Cma07g00752 224 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00752 Cma-Chr7:3339684 Cma12g00497 Cma-Chr12:2578149 1.94E-64 dispersed
Cma03g01031 Cma-Chr3:7174462 Cma07g00752 Cma-Chr7:3339684 8.99E-135 wgd
Cma05g00220 Cma-Chr5:929144 Cma07g00752 Cma-Chr7:3339684 5.16E-80 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00752 K10666 - csv:101205026 397.897