Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00754 ATGGTGCAGAAGGCTGATTTGGTAAATCAAGCTTTGAACGACGCCGTTTCCCTGCGGGACCCACTGAAGATTCACGAAGCTATGCGTTACTCTCTCCTCGCCGGTGGGAAGCGTGTACGGCCAGTGCTCTGTCTCGCCGCCTGCGAGCTTGTTGGTGGTTCTGAGTCCGCCGCCATGCCGGCCGCTTGTGCCACCGAAATGATCCACACCATGTCTTTGATCCACGATGACCTTCCATGCATGGACAACGACGACCTCCGGCGTGGAAAGCCGACGAGCCACCGCATGTTTGGTGAGGACATAGCCATCCTCGCCGGTGACGCTCTTTTAGCCTTCGCATTTGAGCACATCGCAGTGGCGACAGAGGCGGGCGTATCGCCGGAGAGAGTGGTCCAAGCAATCGGAGAATTGGCAAAAGCCACCGGAACATCAGGGTTAGTCGCGGGGCAAGTGGTGGACATAGACTCCGAAGGCTCTAACGACGTCGGATTGGAACTCCTCGAGTACATCCACATACACAAAACGGCAGCGCTTCTGGAAGCCGCCGCCGTCATGGGAGCAATCCTAGGCGGCGGAAGCAACACCGAAGTGGAGAAGGTGAGGAAATTCGCCCGACAGATCGGATTACTCTTCCAAGTGGTAGACGACATTCTAGATGTGACAAAGTCGTCGGAGGAATTGGGGAAGACGGCCGGAAAAGACCTGGCGGCGGACAAAGCGACATATCCAAAATTACTCGGAATCGAAAAATCAAAGGAATTTGCAGAGACGTTAAAGAGAGAAGCCGGAGAAGCGCTGGCCGGATTTGATCCGGCGAAGGCGGAGCCGTTAATTGCCCTGTCAAATTACATAGCCTATAGGCAAAATTGA 870 54.94 MVQKADLVNQALNDAVSLRDPLKIHEAMRYSLLAGGKRVRPVLCLAACELVGGSESAAMPAACATEMIHTMSLIHDDLPCMDNDDLRRGKPTSHRMFGEDIAILAGDALLAFAFEHIAVATEAGVSPERVVQAIGELAKATGTSGLVAGQVVDIDSEGSNDVGLELLEYIHIHKTAALLEAAAVMGAILGGGSNTEVEKVRKFARQIGLLFQVVDDILDVTKSSEELGKTAGKDLAADKATYPKLLGIEKSKEFAETLKREAGEALAGFDPAKAEPLIALSNYIAYRQN 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3347502 3348371 + CmaCh07G007540.1 Cma07g00754 298069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00754 289 ProSitePatterns Polyprenyl synthases signature 1. 73 89 IPR033749 -
Cma07g00754 289 SFLD Isoprenoid Synthase Type I 4 287 - -
Cma07g00754 289 Pfam Polyprenyl synthetase 24 260 IPR000092 GO:0008299
Cma07g00754 289 SFLD Polyprenyl Transferase Like 4 287 - -
Cma07g00754 289 Gene3D Farnesyl Diphosphate Synthase 1 289 IPR008949 -
Cma07g00754 289 SUPERFAMILY Terpenoid synthases 3 269 IPR008949 -
Cma07g00754 289 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 1 289 - -
Cma07g00754 289 ProSitePatterns Polyprenyl synthases signature 2. 207 219 IPR033749 -
Cma07g00754 289 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE, CHLOROPLASTIC-LIKE 1 289 - -
Cma07g00754 289 CDD Trans_IPPS_HT 24 287 IPR000092 GO:0008299
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00754 K13789 GGPS; geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] - csv:101203974 485.337
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00754 Cma-Chr7:3347502 Cma20g01116 Cma-Chr20:8807535 9.32E-172 dispersed
Cma03g01034 Cma-Chr3:7181537 Cma07g00754 Cma-Chr7:3347502 7.47E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g916 . . . . . . Bma09g00356 . . . . Cma07g00754 . Car07g00741 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00249 . . . . Cmo07g00777 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002369 1 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00754 Cma_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.243429 0.092133 14.652905 16.550228 14.480835