Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00755 ATGCGTTTTACTTCTTCCTCATCAGGAGATATGATTAAGCTGTTTAAAGTTAAGGAGAAGCAGAGAGAACTTGCTGAAAATGCTAGTAATGGGGTACCTATAAAGAAGCAAAGTGCTGGAGAACTACGTCTTCACAAAGATATTAGTGAGCTGAATCTACCAAAATCATGTAGCATAACCTTTCCCAATGGCAAGGATGACCTGATGAACTTTGAAGTGTCAATACGACCAGATGAGGGATATTATTTAGGAGGCACATTTTTGTTCTCCTTTACAGTTTCCCCCATCTATCCGCATGAAGCCCCGAAGGTCAAGTGCAGGACAAAGGTCTACCATCCAAACATCGACTTGGAAGGAAACGTCTGCCTCAACATCTTACGAGAAGATTGGAAACCTGTTCTCAATATTAACACTGTTATTTATGGACTCTACCATCTGTTCACGGAACCAAACGATGAGGATCCTCTGAATCATGATGCTGCTGCAGTTTTAAGAGATAATCCGAAGTTATTCGAATCTAATGTGAGAAGGGCTATGGCTGGGGGTTACGTGGGGCCAACCTTTTTCCCACGCTGTATGTAA 582 42.1 MRFTSSSSGDMIKLFKVKEKQRELAENASNGVPIKKQSAGELRLHKDISELNLPKSCSITFPNGKDDLMNFEVSIRPDEGYYLGGTFLFSFTVSPIYPHEAPKVKCRTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNDEDPLNHDAAAVLRDNPKLFESNVRRAMAGGYVGPTFFPRCM 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3350210 3354373 + CmaCh07G007550.1 Cma07g00755 298070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00755 193 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 111 126 IPR023313 -
Cma07g00755 193 Gene3D Ubiquitin Conjugating Enzyme 35 193 IPR016135 -
Cma07g00755 193 CDD UBCc 43 177 IPR000608 -
Cma07g00755 193 PANTHER - 21 183 - -
Cma07g00755 193 SMART ubc_7 42 184 - -
Cma07g00755 193 Pfam Ubiquitin-conjugating enzyme 43 178 IPR000608 -
Cma07g00755 193 SUPERFAMILY UBC-like 35 191 IPR016135 -
Cma07g00755 193 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 39 184 IPR000608 -
Cma07g00755 193 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 21 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00755 K10579 UBE2M, UBC12; ubiquitin-conjugating enzyme E2 M [EC:2.3.2.34] - csv:101205966 373.244
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01034 Cma-Chr3:7181537 Cma07g00755 Cma-Chr7:3350210 3.21E-131 dispersed
Cma07g00755 Cma-Chr7:3350210 Cma11g01260 Cma-Chr11:8461312 6.86E-122 dispersed
Cma19g00649 Cma-Chr19:6865465 Cma07g00755 Cma-Chr7:3350210 3.19E-120 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g922 . . Bda04g00324 Bda10g00313 . . . . . . . Cma07g00755 . Car07g00742 . . . . . . . . . . . . . . . . . . . . . Lsi01g01055 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g00976 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001287 3 4 1 2 2 2 4 2 2 2 2 2 4 1 2 3 2 4 4 2 2 2 2 2 2 1 2 4 6 3 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00755 Cma_Chr07 FPKM 14.285392 18.209684 15.703111 13.729826 15.797611 16.050606 16.308886 31.986389 34.228096 35.431477