Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00778 ATGAACACCGCTGGTCGACTCATTGCTGGGTCTCATAATAGAAACGAGTTCGTTCTGATCAATGCAGAGGACTCTGTTCGGACAAAGTCTGTGGAGGAATTGAGTGGACAAACATGTCGGATTTGTGGAGATGAGATAGAGTTAACTGCTGAAGGAGAGCTCTTTGTTGCGTGTAATGAATGTGCTTTCCCAGTTTGTAGAACTTGCTATGAGTATGAGCGAAGAGAGGGAAATCAAGCTTGTCCACAGTGTAGAACCAGATACAACCGCATTAAGGGTAGTCCTCGGGTTGAAGGCGATGACGATGAAGATGATACCGATGATTTGGATAACGAGTTCGACTATGGCAATCTCGATTCGTTTCGCCCTCATGCTCCCGATGCATCATTTGTTTCACGCCTTAACGCTGGCTGTGGTTCTCACGCTAATGCATCTCACATCCCGGGACAGTCGGAGCACGAACCGTCGCCCCTTGGTTCAGAAATTCCTCTCCTGACATATGGCGAGGAGGATTACGAGATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTCGTGGAAACAGAGACCATTCGATGCTGTACCCTGATCCATCGATATCTTCTCAACGTAGACCAATGGTTCCCGAGAAAGATATTGCCGTTTATGGTTACGGGAGTGTGGCATGGAAGGATAGAACGGAGGATTGGAAGAAGAAGCAAAACAATAAACTTGAAGTGGTGAAGCACCAAGGGGTTGATGACTGTGGAAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCGCTATCAAGGATATTGCCCATCTCTTCGACCATGATAAATCCGTACAGATTAATTATCTTGCTTCGTCTTGTTATTCTCAGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATTTGGTTTGCGGCATCGTGGATTCTCGATCAGTTCCCGAAATGGTATCCGATTGAAAGGGAAACGTATCTCAATAGGCTATCGCTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTCAGTACCGTTGATCCAACGAAAGAACCTCCACTTATCACTGCTAACACGGTACTTTCCATCCTTGCAGTCGACTATCCTGTCGATAAAGTTGCATGCTATGTCTCAGACGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTCTAAGAAATTCAATATTGAGCCCCGTGCCCCCGAGTTTTACTTTTCTCAGAAGATCAATTATTTGAAGAACAAGGTCCATCCGGAATTTTTCAGGGAAAGGCGAGCAATGAAGAGAGAATACGAAGAATTTAAGGTTAGGATAAATGCGTTGGTCTCCATGGCTCGAAAGGTCCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCCGGGAACAACGTTCGAGACCACCCTGGTATGATTCAGGTCTTCCTTGGCCAGAATGGAGTTTGTGACGTTGAAGGAAACGAGCTGCCACATTTGGTTTACGTTTCTCGTGAAAAGCGGCCCAGGTTTGAACATCACAAGAAGGCCGGGGCCATGAATGCACTGGTTCGAGTCTCAGCGGTTCTGTCAAATGCTCCTTATCTACTCAATGTCGACTGCGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACGTCCGGGAAGAAAGTTTGTTTTGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGACATGATCGATATTCAAATCGGAATGTTGTGTTCTTTGATATCAACATGAAAGGATTAGACGGAGTACAAGGACCGATATATGTCGGTACGGGATGTGTTTTCCGAAGGGTTGCCCTCTACGGTAATGATGCTCCTGCCAAGAAGAAACGCCCGAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAGGAACAAGAACGAGAAAAAGAAGAAGACAACGCAGATCCATGCGCTCGAGAATATCGAGGGAATCGAAGAACTACGCATAGAGAAATTGAATGTGTCCCAAACTAAATTAGCGAAGAAATTCGGGCAATCTCCGGTGTTTGTCGCGTCGACCCTGTCGGAAAGTGGAGGAAGTCCTCATGATGTGAGTGCTGCCTCACTGCTAAGAGAAGGCATTCAAGTTATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGTTCTGTTACTGAAGATATCTTGACTGGATTTAAGATGCACTGTCACGGTTGGCGGTCTGTGTACTGTATTCCCGAGAGGCCCGCTTTTAAAGGGTCGGCTCCGATTAACCTCTCCGATCGTCTAAACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCGATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCGGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGCCTGCCTGCTATCTGTCTTCTCACTGGAAAGTTTATTGTTCCTGAGATAAGCAACTATGCCAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATCCTCGAGATGCAATGGGGTGGTGTTGGCATCGACGACTGGTGGAGAAACGAGCAGTTTTGGGTTATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTTTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAGTTTTCAGAGCTCTATATCTTCAAGTGGACATCATTATTAATACCTCCCACGACCTTGTTGATCATAAACATCGTTGGCGTGATCGTCGGGATCTCAGACGCCATCAACAATGGATACGACTCGTGGGGTCCTCTTTTTGGAAGGCTATTTTTCGCTCTTTGGGTGATCATCCACCTCTACCCATTCTTGAAGGGATTATTAGGGAAACAAGATCTGCTACCAACAATCATTGTTGTTTGGTCCATTCTTTTAGCCTCAATCCTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAAAGACGGCCCCATTCTAGAAGTTTGCGGGTTGAATTGTGATTAG 3240 45.4 MNTAGRLIAGSHNRNEFVLINAEDSVRTKSVEELSGQTCRICGDEIELTAEGELFVACNECAFPVCRTCYEYERREGNQACPQCRTRYNRIKGSPRVEGDDDEDDTDDLDNEFDYGNLDSFRPHAPDASFVSRLNAGCGSHANASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGRGNRDHSMLYPDPSISSQRRPMVPEKDIAVYGYGSVAWKDRTEDWKKKQNNKLEVVKHQGVDDCGNDIDDPDLPMMDEARQPLSRILPISSTMINPYRLIILLRLVILSLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLNRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFSKKFNIEPRAPEFYFSQKINYLKNKVHPEFFRERRAMKREYEEFKVRINALVSMARKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPHLVYVSREKRPRFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCFVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGVQGPIYVGTGCVFRRVALYGNDAPAKKKRPSKTCNCLPKWCCLCCGSRRNKNEKKKKTTQIHALENIEGIEELRIEKLNVSQTKLAKKFGQSPVFVASTLSESGGSPHDVSAASLLREGIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDLLPTIIVVWSILLASILTLLWVRINPFVSKDGPILEVCGLNCD 1079
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3510991 3516391 - CmaCh07G007780.1 Cma07g00778 298093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00778 1079 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1078 - -
Cma07g00778 1079 SUPERFAMILY Nucleotide-diphospho-sugar transferases 373 897 IPR029044 -
Cma07g00778 1079 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1078 - -
Cma07g00778 1079 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Cma07g00778 1079 Pfam Cellulose synthase 364 1067 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cma07g00778 1079 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Cma07g00778 1079 MobiDBLite consensus disorder prediction 92 111 - -
Cma07g00778 1079 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Cma07g00778 1079 SUPERFAMILY RING/U-box 26 111 - -
Cma07g00778 1079 MobiDBLite consensus disorder prediction 142 161 - -
Cma07g00778 1079 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 656 IPR029044 -
Cma07g00778 1079 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01067 Cma07g00778 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00778 Cma-Chr7:3510991 Cma09g01181 Cma-Chr9:7489487 0 dispersed
Cma03g01067 Cma-Chr3:7347798 Cma07g00778 Cma-Chr7:3510991 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00778 K10999 - csv:101211094 1994.55