Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00778 | ATGAACACCGCTGGTCGACTCATTGCTGGGTCTCATAATAGAAACGAGTTCGTTCTGATCAATGCAGAGGACTCTGTTCGGACAAAGTCTGTGGAGGAATTGAGTGGACAAACATGTCGGATTTGTGGAGATGAGATAGAGTTAACTGCTGAAGGAGAGCTCTTTGTTGCGTGTAATGAATGTGCTTTCCCAGTTTGTAGAACTTGCTATGAGTATGAGCGAAGAGAGGGAAATCAAGCTTGTCCACAGTGTAGAACCAGATACAACCGCATTAAGGGTAGTCCTCGGGTTGAAGGCGATGACGATGAAGATGATACCGATGATTTGGATAACGAGTTCGACTATGGCAATCTCGATTCGTTTCGCCCTCATGCTCCCGATGCATCATTTGTTTCACGCCTTAACGCTGGCTGTGGTTCTCACGCTAATGCATCTCACATCCCGGGACAGTCGGAGCACGAACCGTCGCCCCTTGGTTCAGAAATTCCTCTCCTGACATATGGCGAGGAGGATTACGAGATTTCTTCTGATCAACATGCTCTTGTACCCCATTTTATGGGTCGTGGAAACAGAGACCATTCGATGCTGTACCCTGATCCATCGATATCTTCTCAACGTAGACCAATGGTTCCCGAGAAAGATATTGCCGTTTATGGTTACGGGAGTGTGGCATGGAAGGATAGAACGGAGGATTGGAAGAAGAAGCAAAACAATAAACTTGAAGTGGTGAAGCACCAAGGGGTTGATGACTGTGGAAATGATATCGACGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCGCTATCAAGGATATTGCCCATCTCTTCGACCATGATAAATCCGTACAGATTAATTATCTTGCTTCGTCTTGTTATTCTCAGCCTGTTTTTCCATTACAGAATTCTTCATCCAGTTAAAGATGCCTATGGCCTGTGGTTGACTTCAGTAATATGTGAAATTTGGTTTGCGGCATCGTGGATTCTCGATCAGTTCCCGAAATGGTATCCGATTGAAAGGGAAACGTATCTCAATAGGCTATCGCTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCCAGTGTGGACGTATTTGTCAGTACCGTTGATCCAACGAAAGAACCTCCACTTATCACTGCTAACACGGTACTTTCCATCCTTGCAGTCGACTATCCTGTCGATAAAGTTGCATGCTATGTCTCAGACGATGGTGCAGCCATGTTAACATTTGAAGCACTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTCTAAGAAATTCAATATTGAGCCCCGTGCCCCCGAGTTTTACTTTTCTCAGAAGATCAATTATTTGAAGAACAAGGTCCATCCGGAATTTTTCAGGGAAAGGCGAGCAATGAAGAGAGAATACGAAGAATTTAAGGTTAGGATAAATGCGTTGGTCTCCATGGCTCGAAAGGTCCCTGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCCGGGAACAACGTTCGAGACCACCCTGGTATGATTCAGGTCTTCCTTGGCCAGAATGGAGTTTGTGACGTTGAAGGAAACGAGCTGCCACATTTGGTTTACGTTTCTCGTGAAAAGCGGCCCAGGTTTGAACATCACAAGAAGGCCGGGGCCATGAATGCACTGGTTCGAGTCTCAGCGGTTCTGTCAAATGCTCCTTATCTACTCAATGTCGACTGCGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCTATGTGTTTCATGATGGATCCTACGTCCGGGAAGAAAGTTTGTTTTGTGCAGTTTCCTCAAAGATTTGATGGGATCGATCGACATGATCGATATTCAAATCGGAATGTTGTGTTCTTTGATATCAACATGAAAGGATTAGACGGAGTACAAGGACCGATATATGTCGGTACGGGATGTGTTTTCCGAAGGGTTGCCCTCTACGGTAATGATGCTCCTGCCAAGAAGAAACGCCCGAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAGGAACAAGAACGAGAAAAAGAAGAAGACAACGCAGATCCATGCGCTCGAGAATATCGAGGGAATCGAAGAACTACGCATAGAGAAATTGAATGTGTCCCAAACTAAATTAGCGAAGAAATTCGGGCAATCTCCGGTGTTTGTCGCGTCGACCCTGTCGGAAAGTGGAGGAAGTCCTCATGATGTGAGTGCTGCCTCACTGCTAAGAGAAGGCATTCAAGTTATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGTTCTGTTACTGAAGATATCTTGACTGGATTTAAGATGCACTGTCACGGTTGGCGGTCTGTGTACTGTATTCCCGAGAGGCCCGCTTTTAAAGGGTCGGCTCCGATTAACCTCTCCGATCGTCTAAACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTGAGCAGACACTGTCCGATCTGGTATGGCTATGGAGGCGGGTTGAAATGGTTGGAACGATTTTCGTACATAAACTCGGTGGTCTATCCGTGGACCTCGATTCCATTGCTTGTTTACTGTAGCCTGCCTGCTATCTGTCTTCTCACTGGAAAGTTTATTGTTCCTGAGATAAGCAACTATGCCAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATCCTCGAGATGCAATGGGGTGGTGTTGGCATCGACGACTGGTGGAGAAACGAGCAGTTTTGGGTTATTGGAGGCGTTTCGTCGCATCTTTTTGCTCTTTTCCAAGGTCTACTCAAGGTTTTAGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAGTTTTCAGAGCTCTATATCTTCAAGTGGACATCATTATTAATACCTCCCACGACCTTGTTGATCATAAACATCGTTGGCGTGATCGTCGGGATCTCAGACGCCATCAACAATGGATACGACTCGTGGGGTCCTCTTTTTGGAAGGCTATTTTTCGCTCTTTGGGTGATCATCCACCTCTACCCATTCTTGAAGGGATTATTAGGGAAACAAGATCTGCTACCAACAATCATTGTTGTTTGGTCCATTCTTTTAGCCTCAATCCTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAAAGACGGCCCCATTCTAGAAGTTTGCGGGTTGAATTGTGATTAG | 3240 | 45.4 | MNTAGRLIAGSHNRNEFVLINAEDSVRTKSVEELSGQTCRICGDEIELTAEGELFVACNECAFPVCRTCYEYERREGNQACPQCRTRYNRIKGSPRVEGDDDEDDTDDLDNEFDYGNLDSFRPHAPDASFVSRLNAGCGSHANASHIPGQSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGRGNRDHSMLYPDPSISSQRRPMVPEKDIAVYGYGSVAWKDRTEDWKKKQNNKLEVVKHQGVDDCGNDIDDPDLPMMDEARQPLSRILPISSTMINPYRLIILLRLVILSLFFHYRILHPVKDAYGLWLTSVICEIWFAASWILDQFPKWYPIERETYLNRLSLRYEKEGKPSELASVDVFVSTVDPTKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFSKKFNIEPRAPEFYFSQKINYLKNKVHPEFFRERRAMKREYEEFKVRINALVSMARKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVCDVEGNELPHLVYVSREKRPRFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCFVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGVQGPIYVGTGCVFRRVALYGNDAPAKKKRPSKTCNCLPKWCCLCCGSRRNKNEKKKKTTQIHALENIEGIEELRIEKLNVSQTKLAKKFGQSPVFVASTLSESGGSPHDVSAASLLREGIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPERPAFKGSAPINLSDRLNQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYIFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDLLPTIIVVWSILLASILTLLWVRINPFVSKDGPILEVCGLNCD | 1079 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3510991 | 3516391 | - | CmaCh07G007780.1 | Cma07g00778 | 298093 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00778 | 1079 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED | 1 | 1078 | - | - | |
Cma07g00778 | 1079 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 373 | 897 | IPR029044 | - | |
Cma07g00778 | 1079 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 1 | 1078 | - | - | |
Cma07g00778 | 1079 | CDD | mRING-HC-C4C4_CesA_plant | 37 | 87 | - | - | |
Cma07g00778 | 1079 | Pfam | Cellulose synthase | 364 | 1067 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cma07g00778 | 1079 | ProSiteProfiles | Zinc finger RING-type profile. | 39 | 85 | IPR001841 | - | |
Cma07g00778 | 1079 | MobiDBLite | consensus disorder prediction | 92 | 111 | - | - | |
Cma07g00778 | 1079 | Pfam | Zinc-binding RING-finger | 29 | 105 | IPR027934 | - | |
Cma07g00778 | 1079 | SUPERFAMILY | RING/U-box | 26 | 111 | - | - | |
Cma07g00778 | 1079 | MobiDBLite | consensus disorder prediction | 142 | 161 | - | - | |
Cma07g00778 | 1079 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 518 | 656 | IPR029044 | - | |
Cma07g00778 | 1079 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 112 | IPR013083 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01067 | Cma07g00778 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma07g00778 | Cma-Chr7:3510991 | Cma09g01181 | Cma-Chr9:7489487 | 0 | dispersed | |
Cma03g01067 | Cma-Chr3:7347798 | Cma07g00778 | Cma-Chr7:3510991 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00778 | K10999 | - | csv:101211094 | 1994.55 |