Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma07g00780 | ATGGGTTTAAGCAAGCCTTACGTTGCTGCATTCTTCATCCAAATCACCTTCGCCGGAATGAGCCTCATGTCCAAGGCTGCCTTTGCTGCTGGTATGAACACTTACATCTTCCTCTTCTACCGTCAAGCTGCCGGTTCCATCGTCTTGGTCCCTCTCACTTTCATCTTAAAAGGGAAGGAAAAACGACCATTGACTTTTAAGCAACTCTGCGAGATTTTTGTTATTTCATCGATCGGGATTACTCTTGCATTGGATGCTTATGGAATGGCGATTAATTACACGTCAGCAACTCTTGGAGCTGCAGCATTTAACTGTGTTCCTGTCACAACGTTCTTCTTCGCCGTCTTATTAAGAATGGAGAAGGTGAACTTAAAGACAGCAGGAGGAATTGCAAAGGTGGTGGGCATAATGGTATGCATGGCTGGTGCAGCCATTCTTGCTTTCTACAAAGGCCCCTACTTGAAGCCACTTTTCACTCACCAACTATTCCACCATGCCCAATCCCAAGCTCACCACCCTCCTAACTCCCAAAGCACATGGATGATCGGCTGTTTCTTCCTCCTCGTTGCGAGTATCTCTTGGGGCATATGGTTCGTCCTCCAGGCTCGGTTCTTAAAAGGGTACCCTCACTTGATGGAGTTCATGTGCGTGCAAACCGTGATGAGTATGGCTCAGTCCTTTGTTGTAGCCATAGCTATGGAAAGAGAGCCTTTGGAGTGGAAATTGGGCTGGAATGTTAGGCTATTTGCTGTACTTTATTGTGGCATTTTGGTAATTGGAATTGCAAATAATGGGCAATGTTGGGTAATCAGAGAGAAGGGTCCAGTTTTTCAAGCCATGACAACGCCGTTGAATTTAATAGCAACAATCATCGGTTCCCAACTAATCTTGTCGGAAGGAATTTACTTAGGAAGTATAATAGGTGCATGCTTCTTGGTGATGAGTCTTTACAGTGTTTTGTGGGGAAAAAACAAAGAGCTTTCAGCTACTTCAAGCAGTCAACCAGCTCCACTAGAGAAAGAGATAGAAGAGTTGACATCTCCAGCTGAAGTCAACTCCTCAATAATCTAA | 1071 | 44.72 | MGLSKPYVAAFFIQITFAGMSLMSKAAFAAGMNTYIFLFYRQAAGSIVLVPLTFILKGKEKRPLTFKQLCEIFVISSIGITLALDAYGMAINYTSATLGAAAFNCVPVTTFFFAVLLRMEKVNLKTAGGIAKVVGIMVCMAGAAILAFYKGPYLKPLFTHQLFHHAQSQAHHPPNSQSTWMIGCFFLLVASISWGIWFVLQARFLKGYPHLMEFMCVQTVMSMAQSFVVAIAMEREPLEWKLGWNVRLFAVLYCGILVIGIANNGQCWVIREKGPVFQAMTTPLNLIATIIGSQLILSEGIYLGSIIGACFLVMSLYSVLWGKNKELSATSSSQPAPLEKEIEELTSPAEVNSSII | 356 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 3528513 | 3531145 | + | CmaCh07G007800.1 | Cma07g00780 | 298095 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma07g00780 | 356 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 40 | 149 | - | - | |
| Cma07g00780 | 356 | Pfam | EamA-like transporter family | 6 | 134 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma07g00780 | 356 | Pfam | EamA-like transporter family | 181 | 320 | IPR000620 | GO:0016020|GO:0016021 | |
| Cma07g00780 | 356 | PANTHER | WAT1-RELATED PROTEIN | 5 | 334 | - | - | |
| Cma07g00780 | 356 | PANTHER | WAT1-RELATED PROTEIN | 5 | 334 | IPR030184 | GO:0016021|GO:0022857 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma07g00780 | Cma20g01077 | CCT | |
| Cma03g01072 | Cma07g00780 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma07g00780 | Cma-Chr7:3528513 | Cma15g01342 | Cma-Chr15:8415672 | 1.40E-71 | dispersed | |
| Cma07g00780 | Cma-Chr7:3528513 | Cma07g00781 | Cma-Chr7:3534105 | 9.76E-164 | tandem | |
| Cma04g02449 | Cma-Chr4:16846629 | Cma07g00780 | Cma-Chr7:3528513 | 1.16E-92 | transposed | |
| Cma03g01072 | Cma-Chr3:7376133 | Cma07g00780 | Cma-Chr7:3528513 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma07g00780 | - | - | csv:101205842 | 585.874 |