Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00782 ATGGCGGATCTGGGAAGCAACCCTGGCCAAATGTCGAAAGAAACAGCCCTCCAGGCGCTAAACACCATAATCCAGCTCCATTTCGAGAAGACCCTGGAGAAGAAACGGGCCATAGATCTCCAAAAGAAACAGCTCTTCCACCTCTTCCACCTCTTCTTCATCTTCCTGGGCCTCATCTTCCTCGCCCAATCCCTTTCCCATCGCCTCCACTGCCGCCATTCCTGGATCCCCATTGCTCTTCTCTCCGTTTCCCATCTCTCTTTCTACGTCTCTGTCGCTCAGACCCTCCGGTGCATCAATGGCTTCAAGTACCAGCGCCGTTGCCATAAGCTCACTCTGGCTTTGGCCACTCAGAAGCTCAGAGACATCAAGATGAGGCTTGCCGCCGGTGGAGGGTTCGACGGCAGCCTGGCGGAGGAGGACTTTGAGATTCATTACCAGGAGCCGCCGGAGAGCTATTTGGAGCACGATTCCCGCCAGGCTCCGGAGCATGCTCCGCCCGCCCAAACGAAACGGGACACCCCGGAGATCGTCGATGATCACAAGAACGAAGGTAAGGAGAAGGCGGCGGCAGCAGAAGAGACCCCACCGGAGCCGCCACCCTCCGATGAGGTATCAGACAAGACAACGGTGGTGGAAACTCCATGTGAGACAAAGAATGACAATAGCCCAACAAATTGGGAAGCAGAGAAAGAATTTCATTTCGGTATTTATTTAGTTTGA 723 54.36 MADLGSNPGQMSKETALQALNTIIQLHFEKTLEKKRAIDLQKKQLFHLFHLFFIFLGLIFLAQSLSHRLHCRHSWIPIALLSVSHLSFYVSVAQTLRCINGFKYQRRCHKLTLALATQKLRDIKMRLAAGGGFDGSLAEEDFEIHYQEPPESYLEHDSRQAPEHAPPAQTKRDTPEIVDDHKNEGKEKAAAAEETPPEPPPSDEVSDKTTVVETPCETKNDNSPTNWEAEKEFHFGIYLV 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3537833 3539583 - CmaCh07G007820.1 Cma07g00782 298097

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00782 240 MobiDBLite consensus disorder prediction 207 223 - -
Cma07g00782 240 PANTHER OS04G0687200 PROTEIN 8 160 - -
Cma07g00782 240 MobiDBLite consensus disorder prediction 150 228 - -
Cma07g00782 240 MobiDBLite consensus disorder prediction 169 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00782 - - - cpep:111786910 269.626
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01074 Cma07g00782 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01074 Cma-Chr3:7380445 Cma07g00782 Cma-Chr7:3537833 7.22E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1233 Blo04g00971 . . . Bpe15g00394 Bpe13g00011 . . . . Cma03g01074 Cma07g00782 . . Sed10g0484 . Cpe10g00353 Bhi03g01389 Tan03g1340 Cmetu08g0734 . . . . . . . . . . . . . . . . . . Cme08g01051 . . . Bda14g01061 . . Bma03g01037 Bma06g00529 . . . . . . . . . . . . . . . . . . . . . . . . Csa06g02808 Chy02g01026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008943 2 1 1 2 2 1 1 2 1 1 1 1 2 1 1 0 1 2 2 1 1 0 1 1 1 0 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00782 Cma_Chr07 FPKM 1.520055 1.846388 0.0 0.0 1.225851 1.088003 1.183028 0.0 0.0 0.0