Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00789 ATGGTGAGAGATGACTTGTGTATTACAATTCCGAGCGATTTCAGATGTCCGATCTCGCTTGACGTCATGAAATCCCCTGTAAGTTTGTGTACCGGAGTCACTTACGATCGTTCCAGTATCCAGAAATGGCTCGACAATGGAAACAACACTTGTCCGGCTACCATGCAGATCCTTCAAACGAAGGAGTTCGTCCCTAACCACAATCTCCACCGCCTTATTCAGATTTGGTCCGATTCCCTTCGGCACCGAGTCCACTCGCCCGATTCCTCCCCTGTTTCCGACTCGGTACTCTCCTCCGATCAAGTTCTTGACCTCGTCAAGCGCATAGAGATCGATCAATCTAGCACCGACTCGCTTCTGCGGCTTGTCTCTTTCGCCGCTAAATCGGTGGAGAATCGGAGGCTTCTCTGTGGAATCGGCGGTTTCGTGCCGGTTCTTGTCGATCTTCTTAGGAATGTCAATGGCGGCGTTTTGGTTGAGCAGACTGTGAGGTTATTGCATTTGATTCGAAATGAAATAGAAGATAAGGAGCGGTTTGTGAAATCGATGTTGAAGAGCGATCGTAATTGTCTTTCGTCTCTGCTTCTGGTTCTGCGGAAAGGAACCGTCGAATTAAAAATCTGTTCGGCTAGTCTACTAGAGCATCTCGCAATCGACGCCGAGTCGAAGATTGTAATCGCCGAAACGGATGGATTAATGCAAGAATTACTGAAATTAACAAACTCTGAGAACGATTCAAACCTAATCGAATCGGTTCTATCGTGTTTAATTTCAATTTCAATGCCGAAACGGATCAAAATCATATTAGTCCATCTCGGTGCGATAAAATCGGTAACGAAGCTTCTCTCAGAAACGAACTCAACTTCGAGCGTTTCGATAACGGAGAAGGTTCTGAAAGTGCTGGAAACCGCGTCGACGGTGAGGGAAGGAAGGATGGAGATCGGAGAGGACTCAACGTGCTTAGCAGCGATCGTACAAAAGGTACTGAAGGTGTCGAACACGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGCTATCTGTTCAGAGATGAGAAGGCAGCAGAGGCGTTAACGAAGGCGAACGGATTGACGAAGATTTTGCTGTTAATGCAGAGCAATTGCTCGCCACCAGTACGACAGATGGCGAGAGATTTGCTGAAGATTTTCCGAATCAATTCGAAATCGTGCCTGGCGAGTTACGACACGAAAACCACGCATATCATGCCCTGTTAG 1239 47.94 MVRDDLCITIPSDFRCPISLDVMKSPVSLCTGVTYDRSSIQKWLDNGNNTCPATMQILQTKEFVPNHNLHRLIQIWSDSLRHRVHSPDSSPVSDSVLSSDQVLDLVKRIEIDQSSTDSLLRLVSFAAKSVENRRLLCGIGGFVPVLVDLLRNVNGGVLVEQTVRLLHLIRNEIEDKERFVKSMLKSDRNCLSSLLLVLRKGTVELKICSASLLEHLAIDAESKIVIAETDGLMQELLKLTNSENDSNLIESVLSCLISISMPKRIKIILVHLGAIKSVTKLLSETNSTSSVSITEKVLKVLETASTVREGRMEIGEDSTCLAAIVQKVLKVSNTATEHAVTTLWSVCYLFRDEKAAEALTKANGLTKILLLMQSNCSPPVRQMARDLLKIFRINSKSCLASYDTKTTHIMPC 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3573014 3574252 + CmaCh07G007890.1 Cma07g00789 298104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00789 412 Gene3D - 164 401 IPR011989 -
Cma07g00789 412 PANTHER WDSAM1 PROTEIN 4 412 IPR045185 GO:0061630
Cma07g00789 412 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Cma07g00789 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 82 IPR013083 -
Cma07g00789 412 SUPERFAMILY ARM repeat 121 394 IPR016024 -
Cma07g00789 412 CDD RING-Ubox_PUB 14 56 IPR045210 -
Cma07g00789 412 SUPERFAMILY RING/U-box 6 78 - -
Cma07g00789 412 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Cma07g00789 412 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Cma07g00789 412 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 4 412 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01083 Cma07g00789 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00621 Cma-Chr2:3745813 Cma07g00789 Cma-Chr7:3573014 3.32E-137 dispersed
Cma07g00789 Cma-Chr7:3573014 Cma12g00605 Cma-Chr12:3181039 1.82E-38 dispersed
Cma20g01057 Cma-Chr20:7960332 Cma07g00789 Cma-Chr7:3573014 4.02E-38 dispersed
Cma03g01083 Cma-Chr3:7425706 Cma07g00789 Cma-Chr7:3573014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00789 - - cmax:111478747 691.804