Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00791 ATGCTGAGTTCTGACAGAGACACAGATGTTTTCTTCGACTCAGAAGATTACTTGCCATTAGAGGACTCCTTGGTAGCAGAAGAAGTGGATTCCAACAAGTTGGGATATGAAATATGGATGAGTGAGCCACAGAGCATTAAGAGGAGAAGACAGCGTTTTCTTCAAGAAGTTGGATTACTTGAATTTGCGTCTTCAAGAACTTGTGCACATGATTTAGTGATTGAATCAAGCGATTCATCAGGGAGGATGGAATTGGAGAGACTAACAGAATTCAGTGGAGCTGTCTCAAGTTCTGACTATGCTCCTACCTGTAATGTGGAGGAGAATGATTTAGAACTATGCTCAAATGAGATGCTTCTACCAGTTTCTGTTTCGAACTCCGGTTCTCGACGTTGCCATGGCGAAGCTGACGTTGAAGGTTGCCGGGATATTGATGTCAGTAAAAGAAAAATAAAGAAGTGGTGGAGATCATTCAAGAACAAGGCGGCGAGCTTAAGAAGGACAGAGTTTTCTGAGGAATTGAAAACAATCCCAGCAGAATCCAAAACTTGCAGAATGAAGGTGTATCAAAACAAGAAGAGATGCTCAGAGTTTAGTGCTTTGTATATGAGACAGCAGATTGTTGCACACAAGGGCTTGATTTGGACAATGAAGTTTAGTCCAGATGGGAAGTATTTGGCAAGTGGAGGAGAAGACGGAGTCGTTCGTGTATGGCGTATATCGTCTGCAAATGTCTCTAGTGAGTTCTTAGCAAATGATGGCAATCATAACAACAAACCAAGAGAAGGGAAGTCTAGCCTCAGCAGCAAACCGTTGAGATTTGCCACTGTTGTCATTCCTGAAAAGGTTTTTCAGATTGATGAGCAGCCAGTGCAAAAGTTCTATGGGCATTCCAGTGATGTCTTGGACATAGCTTGGTCCAATTCAAACTGTCTTCTTTCATCCTCAAAGGATAAAACTGTGCGCTTGTGGGGAGTTGGCTCTGATCAATGTCTTGGTGTTTTCCACCACAAGAACTATGTGACTTGTATCCAATTCAATCCAATGGATGAAAACTACTTCATCAGTGGCTCAATTGATGGCAAAATCCGAGTTTGGAGTGTGTTGAAACAGCGGGTGGTTGATTGGGCTGATGTCCGAGATGTCATTACTGCTTTAGCTTATCAACCAGATGGGAAGGGTTTTGCTATTGGCTCGATTACCGGCACGTGTCGTTTCTACAAAACATCAGGTGATTATTTTCATTTGGATGCACAGATCAATGTTCAAGGGCGAAAAAAGGCCTCGGGCAAAAGGATCACTGGCATTCAGTTTTGCCGGGAAAACTTTCAAAGAGTGATGATAACTTCGGAAGACTCGAAAGTACGCATATTCGAAGGAACCGAAATCGTCAACAAATATAAAGGTCTACCGAAGTCGGGGAGTCAGATGTCTGCTTCTTTTACAAAAAATAGGAAGCATATAATATCTGTAGGAGAGGACTCTCGTGTATATATGTGGAACTATGATAGTCTTCACCTCCCATCAATGAAAGAAACGAAATCTCAGCAGTCTTGTGAGCATTTCTTGTCTGATGGTGCTTCTGTTGCTATACCATGGCCTGGTGTTGGAACCGAGCTGAAATGCTTTGGCAACAACCAACGGCAGTTCTCACAGAGTCAGGATTGCCAAGGGGCTGCTGCTTCTTGGACAAGAGATTCAGAGCGTTTTTCCCTTGCTAATTGGATCTCTGCTGATAGTCTGTGCCGTGGATCCGCAACATGGCCAGAAGAGAGGCTACCTCTCTGGGATTTACCAGTTGCAGATGATGAACATGGCAACCTGGAACACCATAATAGTCAGAGTGACGCCCACGACCATGTAGCTCCACCCGACACATGGGGCCTTGTGATTGTCGTGGCTGGATTAGATGGAACTATAAAGACATTCCATAACTATGGATTGCCCATCAGGCTTTAG 1959 43.8 MLSSDRDTDVFFDSEDYLPLEDSLVAEEVDSNKLGYEIWMSEPQSIKRRRQRFLQEVGLLEFASSRTCAHDLVIESSDSSGRMELERLTEFSGAVSSSDYAPTCNVEENDLELCSNEMLLPVSVSNSGSRRCHGEADVEGCRDIDVSKRKIKKWWRSFKNKAASLRRTEFSEELKTIPAESKTCRMKVYQNKKRCSEFSALYMRQQIVAHKGLIWTMKFSPDGKYLASGGEDGVVRVWRISSANVSSEFLANDGNHNNKPREGKSSLSSKPLRFATVVIPEKVFQIDEQPVQKFYGHSSDVLDIAWSNSNCLLSSSKDKTVRLWGVGSDQCLGVFHHKNYVTCIQFNPMDENYFISGSIDGKIRVWSVLKQRVVDWADVRDVITALAYQPDGKGFAIGSITGTCRFYKTSGDYFHLDAQINVQGRKKASGKRITGIQFCRENFQRVMITSEDSKVRIFEGTEIVNKYKGLPKSGSQMSASFTKNRKHIISVGEDSRVYMWNYDSLHLPSMKETKSQQSCEHFLSDGASVAIPWPGVGTELKCFGNNQRQFSQSQDCQGAAASWTRDSERFSLANWISADSLCRGSATWPEERLPLWDLPVADDEHGNLEHHNSQSDAHDHVAPPDTWGLVIVVAGLDGTIKTFHNYGLPIRL 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3588454 3591990 + CmaCh07G007910.1 Cma07g00791 298106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00791 652 Gene3D - 189 527 IPR015943 GO:0005515
Cma07g00791 652 PANTHER WD REPEAT DOMAIN 44 5 652 IPR040324 -
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 328 367 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 200 239 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 460 501 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 419 459 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 287 325 IPR001680 GO:0005515
Cma07g00791 652 SMART WD40_4 369 408 IPR001680 GO:0005515
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 334 368 IPR001680 GO:0005515
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 242 - -
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats profile. 294 334 IPR001680 GO:0005515
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 294 324 - -
Cma07g00791 652 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 652 - -
Cma07g00791 652 Pfam WD domain, G-beta repeat 330 367 IPR001680 GO:0005515
Cma07g00791 652 Pfam WD domain, G-beta repeat 208 238 IPR001680 GO:0005515
Cma07g00791 652 Pfam WD domain, G-beta repeat 289 324 IPR001680 GO:0005515
Cma07g00791 652 SUPERFAMILY WD40 repeat-like 201 504 IPR036322 GO:0005515
Cma07g00791 652 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Cma07g00791 652 PRINTS G protein beta WD-40 repeat signature 312 326 IPR020472 -
Cma07g00791 652 PRINTS G protein beta WD-40 repeat signature 354 368 IPR020472 -
Cma07g00791 652 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 334 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00791 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101207772 1044.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma03g01085 Cma07g00791 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00791 Cma-Chr7:3588454 Cma15g01017 Cma-Chr15:6290271 4.32E-130 dispersed
Cma03g01085 Cma-Chr3:7437804 Cma07g00791 Cma-Chr7:3588454 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma07g00791 Cma_Chr07 FPKM 2.442419 3.7166 1.873365 1.754602 3.345943 3.136207 3.313662 0.636129 0.482783 0.853464