Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00796 ATGGAGCCCCATCACCTCCCAAACCCCTCTTCCCATCTCCAATTTTCCGCCATCGACGATCCCGACATTGTTCACCTTCACCATGTTCACGAGCTCAGTTCTATTTGGCCGTCGTTGTTGCCTCATCAACCGCTCCCTACCTCATCCACCCATCTGATGTCAGGCTACGGTAATGATCAAGAAGAGCCAGAAGAAGAGCTTGGTGCTATGAAGGAGATGATGTACAAGATCGCCGCGATGCAGCCAGTCGATATCGACCCATCAACTATTCGAAAACCCAAGAGACGAAACGTTCGAATCAGCGATGACCCACAAAGCATTGCCGCTCGTCTTCGTCGAGAAAGAATCAGCGAAAAGATCAGAATTCTTCAAAGGCTTGTCCCTGGAGGAACAAAGATGGATACAGCTTCAATGCTAGATGAAGCCATTAGGTATGTCAAGTTCTTGAAAAGACAAATCCAATTTCTTCAGTCAACTCAGCCGAGCACCGGCGACTGCGCAGCCGCCGGAGGGTGGCCATTTCCATTCCATAAGGCTAATGCTTCAAACTCCTCGTCCACTTCCATGGAAGCTACTCCAACCATTATGCCATCAGGATGCAAGGGGCGCCAAATTTCATCATCTCCCAGTTCCTCTTTCCTTCTGCAATTTAGCCCTAAAATTTCTCCTGCGATTAATCACTTGATTGTTGAAAATTCGGAGCAGGACGAAGAAATAAAGAGTGGAACGCTTCAAATCAACTGGCAAGACTCGTTATCAAGAATAAAGCCCCTGGTTCTGCTGTTAATAGATAGCCTTCGCTTCTCACATTCTGGAGGTGAGCTGATCATATGGAATTTGCACCATTTGGAAAGTGGCCAGACTTGGAAGGTCCTGAAGACGTTATTGTATTTGTAA 897 47.05 MEPHHLPNPSSHLQFSAIDDPDIVHLHHVHELSSIWPSLLPHQPLPTSSTHLMSGYGNDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIQFLQSTQPSTGDCAAAGGWPFPFHKANASNSSSTSMEATPTIMPSGCKGRQISSSPSSSFLLQFSPKISPAINHLIVENSEQDEEIKSGTLQINWQDSLSRIKPLVLLLIDSLRFSHSGGELIIWNLHHLESGQTWKVLKTLLYL 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3617126 3623093 + CmaCh07G007960.1 Cma07g00796 298111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00796 298 CDD bHLH_AtIND_like 101 158 - -
Cma07g00796 298 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 202 - -
Cma07g00796 298 Gene3D - 103 164 IPR036638 GO:0046983
Cma07g00796 298 SMART finulus 106 155 IPR011598 GO:0046983
Cma07g00796 298 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 158 IPR036638 GO:0046983
Cma07g00796 298 Pfam Helix-loop-helix DNA-binding domain 109 149 IPR011598 GO:0046983
Cma07g00796 298 MobiDBLite consensus disorder prediction 183 202 - -
Cma07g00796 298 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 100 149 IPR011598 GO:0046983
Cma07g00796 298 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 5 202 IPR045843 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01089 Cma07g00796 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00179 Cma-Chr5:758601 Cma07g00796 Cma-Chr7:3617126 6.34E-48 dispersed
Cma07g00796 Cma-Chr7:3617126 Cma09g00235 Cma-Chr9:1010148 4.86E-40 dispersed
Cma03g01089 Cma-Chr3:7466835 Cma07g00796 Cma-Chr7:3617126 5.76E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35412 PF00010 HLH 2.10E-06 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00796 - - csv:101222266 298.901