Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00796 | ATGGAGCCCCATCACCTCCCAAACCCCTCTTCCCATCTCCAATTTTCCGCCATCGACGATCCCGACATTGTTCACCTTCACCATGTTCACGAGCTCAGTTCTATTTGGCCGTCGTTGTTGCCTCATCAACCGCTCCCTACCTCATCCACCCATCTGATGTCAGGCTACGGTAATGATCAAGAAGAGCCAGAAGAAGAGCTTGGTGCTATGAAGGAGATGATGTACAAGATCGCCGCGATGCAGCCAGTCGATATCGACCCATCAACTATTCGAAAACCCAAGAGACGAAACGTTCGAATCAGCGATGACCCACAAAGCATTGCCGCTCGTCTTCGTCGAGAAAGAATCAGCGAAAAGATCAGAATTCTTCAAAGGCTTGTCCCTGGAGGAACAAAGATGGATACAGCTTCAATGCTAGATGAAGCCATTAGGTATGTCAAGTTCTTGAAAAGACAAATCCAATTTCTTCAGTCAACTCAGCCGAGCACCGGCGACTGCGCAGCCGCCGGAGGGTGGCCATTTCCATTCCATAAGGCTAATGCTTCAAACTCCTCGTCCACTTCCATGGAAGCTACTCCAACCATTATGCCATCAGGATGCAAGGGGCGCCAAATTTCATCATCTCCCAGTTCCTCTTTCCTTCTGCAATTTAGCCCTAAAATTTCTCCTGCGATTAATCACTTGATTGTTGAAAATTCGGAGCAGGACGAAGAAATAAAGAGTGGAACGCTTCAAATCAACTGGCAAGACTCGTTATCAAGAATAAAGCCCCTGGTTCTGCTGTTAATAGATAGCCTTCGCTTCTCACATTCTGGAGGTGAGCTGATCATATGGAATTTGCACCATTTGGAAAGTGGCCAGACTTGGAAGGTCCTGAAGACGTTATTGTATTTGTAA | 897 | 47.05 | MEPHHLPNPSSHLQFSAIDDPDIVHLHHVHELSSIWPSLLPHQPLPTSSTHLMSGYGNDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIQFLQSTQPSTGDCAAAGGWPFPFHKANASNSSSTSMEATPTIMPSGCKGRQISSSPSSSFLLQFSPKISPAINHLIVENSEQDEEIKSGTLQINWQDSLSRIKPLVLLLIDSLRFSHSGGELIIWNLHHLESGQTWKVLKTLLYL | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3617126 | 3623093 | + | CmaCh07G007960.1 | Cma07g00796 | 298111 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00796 | 298 | CDD | bHLH_AtIND_like | 101 | 158 | - | - | |
Cma07g00796 | 298 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 5 | 202 | - | - | |
Cma07g00796 | 298 | Gene3D | - | 103 | 164 | IPR036638 | GO:0046983 | |
Cma07g00796 | 298 | SMART | finulus | 106 | 155 | IPR011598 | GO:0046983 | |
Cma07g00796 | 298 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 105 | 158 | IPR036638 | GO:0046983 | |
Cma07g00796 | 298 | Pfam | Helix-loop-helix DNA-binding domain | 109 | 149 | IPR011598 | GO:0046983 | |
Cma07g00796 | 298 | MobiDBLite | consensus disorder prediction | 183 | 202 | - | - | |
Cma07g00796 | 298 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 100 | 149 | IPR011598 | GO:0046983 | |
Cma07g00796 | 298 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 5 | 202 | IPR045843 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01089 | Cma07g00796 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma05g00179 | Cma-Chr5:758601 | Cma07g00796 | Cma-Chr7:3617126 | 6.34E-48 | dispersed | |
Cma07g00796 | Cma-Chr7:3617126 | Cma09g00235 | Cma-Chr9:1010148 | 4.86E-40 | dispersed | |
Cma03g01089 | Cma-Chr3:7466835 | Cma07g00796 | Cma-Chr7:3617126 | 5.76E-83 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35412 | PF00010 | HLH | 2.10E-06 | No_clan | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00796 | - | - | csv:101222266 | 298.901 |