Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00806 ATGTCGAACACCATGACCACTGAGTTGCATTCGACCTATTGGCTAGATCGCTATGCTGATGAAAGTGACTCGTTTCAAAATGTCAAGGATGAGTATATTTCTTCTACTTCTTGGCACCGTGCTTTGCAAATTCCGGATTCTTCAGTTACCATGGATGATGAGAATCACCTTTTTGCCGAAGTTTTGAGCCAAAAGGACAGAAGTGTTTCACATATAGTGTGGAATCCAGGGTCAGAATTCTCATTTTGTGCTTGTTCTTGGTCAATGCAAGGAAATCTTTGCAAACACGTGATCAAGGTGAATATGATCCGTTCACATGGAGGCACTGCTCGAGTCTTGTCGTTGAGGTTAGACTTCTTACACCTCTTTGGCCTTCTGCACTACCCTTCGGACTCGGATTTTGTACAAAAGTTGCAGAGAGTAATGGCGACCATGAATTCCAGCGTCTTGGCCTGCAACTACGCCATTTCAGGTGCTGGATCCGCCGAGCTTAACTCGAAACTCAGCGCCGTGACTTCTGTTGCGTCGCCTGGGGTTTCTGGTTACAAGTTGCCTGCGATTAGGGCTCAACAGGCTAGGGTTCCTGAAGCTAAGAATGAAGGAAGGAGAACTGCGCTTCTCTTCCTTGGAGCTTCCCTCTTTGCTGCGGCTGCTGCTTCCTCCAACTCTACGGCTAATGCTGGAGTCATTGAAGAGTACCTTGAGAAGAGTAAAGCTAACAAGGAACTGAATGACAAGAAAAGATTAGCAACAAGTGGAGCAAACTTTGCAAGGGCATACACTGTTCAGTTTGGATCATGCAAGTTCCCAGAGAACTTCACAGGGTGCCAAGATCTTGCAAAACAAAAGAAAGTCCCATTTATCTCTGATGATTTGGAATTGGAGTGTGAGGGGAAGGACAAGTACAAGTGTGGTTCCAATGTCTTCTGGAAATGA 936 45.73 MSNTMTTELHSTYWLDRYADESDSFQNVKDEYISSTSWHRALQIPDSSVTMDDENHLFAEVLSQKDRSVSHIVWNPGSEFSFCACSWSMQGNLCKHVIKVNMIRSHGGTARVLSLRLDFLHLFGLLHYPSDSDFVQKLQRVMATMNSSVLACNYAISGAGSAELNSKLSAVTSVASPGVSGYKLPAIRAQQARVPEAKNEGRRTALLFLGASLFAAAAASSNSTANAGVIEEYLEKSKANKELNDKKRLATSGANFARAYTVQFGSCKFPENFTGCQDLAKQKKVPFISDDLELECEGKDKYKCGSNVFWK 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3691354 3696297 - CmaCh07G008060.1 Cma07g00806 298121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00806 311 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT N, CHLOROPLASTIC 142 311 IPR008796 GO:0009522|GO:0015979
Cma07g00806 311 Gene3D - 228 311 IPR044907 -
Cma07g00806 311 Pfam Photosystem I reaction centre subunit N (PSAN or PSI-N) 185 311 IPR008796 GO:0009522|GO:0015979
Cma07g00806 311 ProSiteProfiles Zinc finger SWIM-type profile. 68 105 IPR007527 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g00806 Cma-Chr7:3691354 Cma09g00487 Cma-Chr9:2183830 1.46E-32 dispersed
Cma03g01099 Cma-Chr3:7522637 Cma07g00806 Cma-Chr7:3691354 3.64E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00806 K02701 - csv:101204396 290.041