Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma07g00817 | ATGAACAAGGGCAGCGCTCGGAAAAGTCGACCACCGCCTCAGAACCCTTCGCCGGCTCCACCGGCCAAGCATCAGGCACTGTCTCAAGAAGAAGATTTTGTCGATGAAGATGTTTTCCTCGACGAGAATCTTCTCGACGAGGATGCTCTCATCCTCCGCGACATTGAGGAGCGTCAGGCCCTCGCTTCCCGTCTCTCTAAATGGACTCGTCCACCTCTTTCCCAGGAGTACGTCTCTCAGTCGAAGAGCATTATGTTTCAGCAATTGGAGATTGATTATGTGATTGGGGAAAGTCACAGAGAATTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTAAGAATTTTCGGGGTTACGAGGGAAGGACATAGTGTTTGCTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGAATGGGTCCTGATGATATCTCTCTTTTTCACCAAACACTTGAGGCTAGAATGAAGGAGATGAATAGGAACAGTAAGGCACCTAGTTTCGTGCGCCGTATTGAATTGGTGCAAAAGCGAAGTATTATGTACTACCAGCAGCAAACTTCTCAATCCTTTCTTAAAATTGTTGTTGCACTTCCAACAATGGTCGCCAGCTGCCGTGGTATTCTTGACAGGGGCATACAAATCGATGGCTTTGGTATGAAGAGCTTCATGACATATGAAAGCAATGTGCTATTTGCCCTCCGTTTTATGATTGATTGTAATGTTGTGGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCCGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCAAGGATCCTGTAATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTTATTCGCAATGTCATGACCCTTAACTCTTGCTCTCCTATTGCGGGTGTTGATGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATAGAGAGAGCTGAGGCACTGAAAATAGCAGAATTTCCAATATTGGGTCGGATCAGGAATAGCAAAGTTCGTGTTAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGGTGGAAGGAAGAGTCCAATTTGATTTACTTCAGGCAATGCAACGAGATTATAAATTAAGTTCGTACTCGTTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCAGAAACACGTAGACGGCTGGCTGTTTATTGTTTAAAGGATGCATATCTTCCACAACGGCTTTTAGATAAACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCTATTTCGTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTGCTCTCTCAACTCCTTAGGAAGGCAAAACAAAAGAACCTCGTTATTCCGAATGCTAAACAGGCAGGATCTGATCAAGGAACCTACGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGCTGGATTTTGCATCTCTGTATCCATCCATCATGATGGCATATAATTTATGTTATTGCACTCTGGTGACTCCAGAAGATGTTCGCAAGCTAAATCTGCCCCCTGAACATTTCAATAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATCTACAGAAGGGGATACTTCCTGAAATATTAGAGGAATTATTGACTGCTCGGAAAAGAGCGAAAGCAGATTTGAAGGAGGCAAAAGATCCTTTTGAGAAGGCTGTGTTGGATGGTCGACAGCTAGCTCTGAAGATAAGTGCAAATTCTGTGTATGGGTTTACAGGAGCTACTGTTGGTCAGTTACCGTGTCTAGAGATATCATCAAGTGTTACAAGCTATGGCCGACAAATGATTGAGCACACAAAGAAACTTGTGGAAGATAAATTTACAACTCTTGGGGGCTACGAGCACAATGCTGAGGTAATCTATGGTGATACAGATTCAGTAATGGTACAATTTGGTGTGCCCAGTGTAGAAGCAGCGATGATCTTGGGAAGGGAAGCAGCTGATTATATCAGTGGTACTTTCATAAAACCCATCAAGTTAGAGTTTGAGAAAGTTTATTACCCATATCTGTTGATTAGTAAGAAGAGATACGCTGGTTTATTTTGGACTAATCCAAACAAGTTTGACAAGATGGATACCAAAGGCATTGAGACAGTTCGAAGAGATAATTGCTTATTGGTGAAAAACCTTGTAAATGAGTGCTTGCACAGAATTCTTATTGATAGAGATGTCCCTGGGGCAGTTCAATATGTGAAGAACACGATTTCTGATCTACTTATGAATCGTGTGGATTTATCTCTCTTGGTTATCACTAAGGGACTGACAAAAACTGGAGATGATTATGAAGTGAAGGCAGCTCATGTCGAACTTGCTGAGCGCATGCGTAAGCGAGATGCTGCCACTGCTCCAAATGTTGGCGATCGAGTACCTTATGTGATCATTAAAGCTGCAAAAGGTGCCAAGGCATATGAGAAATCAGAGGATCCCATTTACGTTCTAGAGAATAGCATACCAATAGACCCACAGTACTATCTCGAGAATCAGATGAGCAAGCCTCTTCTACGAATTTTTGAGCCCATCTTGAAAAATGCTAGCAAGGAACTTCTACATGGAAGTCACACGAGATCAATTTTTATTTCTACTCCTTCAAACAGTGGCATAATGAAATTTGCCAAGAAACAGCTTACCTGCATTGGCTGTAAGGCTCTACTAAGCAAGGCAGACCATACTCTCTGCGCACACTGCAAAGGAAGAGAAGCTGAACTGTACTGCAAAGCGGTAGAAAATGTGTCTGATTTGGAGATGGTTTTTGGAAGGCTTTGGACGCAGTGCCAAGAATGCCAAGGGTCCCTTCACCAAGATGTTCTCTGTACGAGTCGAGACTGTCCAATATTTTATCGAAGAAAGAAGGCACAAAAAGACATGGCTGAAGCTAAACAGCTTTTGGAACGTTGGAATTTCTAA | 3261 | 42.26 | MNKGSARKSRPPPQNPSPAPPAKHQALSQEEDFVDEDVFLDENLLDEDALILRDIEERQALASRLSKWTRPPLSQEYVSQSKSIMFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTREGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHQTLEARMKEMNRNSKAPSFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVASCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTKDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSKVRVKDTTFSSRQLGTRESKEITVEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVPSVEAAMILGREAADYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHRILIDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYEKSEDPIYVLENSIPIDPQYYLENQMSKPLLRIFEPILKNASKELLHGSHTRSIFISTPSNSGIMKFAKKQLTCIGCKALLSKADHTLCAHCKGREAELYCKAVENVSDLEMVFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKQLLERWNF | 1086 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 3771937 | 3787568 | + | CmaCh07G008170.1 | Cma07g00817 | 298132 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma07g00817 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 585 | 598 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cma07g00817 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 677 | 689 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cma07g00817 | 1086 | PRINTS | DNA-directed DNA-polymerase family B signature | 738 | 746 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cma07g00817 | 1086 | SUPERFAMILY | DNA/RNA polymerases | 551 | 961 | IPR043502 | - | |
Cma07g00817 | 1086 | TIGRFAM | pol2: DNA polymerase (pol2) | 352 | 957 | - | - | |
Cma07g00817 | 1086 | CDD | POLBc_delta | 567 | 960 | - | - | |
Cma07g00817 | 1086 | Pfam | C4-type zinc-finger of DNA polymerase delta | 996 | 1067 | IPR025687 | - | |
Cma07g00817 | 1086 | SMART | polmehr3 | 293 | 752 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Cma07g00817 | 1086 | Gene3D | DNA Polymerase, chain B, domain 1 | 89 | 266 | - | - | |
Cma07g00817 | 1086 | CDD | DNA_polB_delta_exo | 290 | 518 | - | - | |
Cma07g00817 | 1086 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cma07g00817 | 1086 | Pfam | DNA polymerase family B | 526 | 959 | IPR006134 | GO:0000166|GO:0003677 | |
Cma07g00817 | 1086 | PANTHER | DNA POLYMERASE DELTA CATALYTIC SUBUNIT | 82 | 1086 | - | - | |
Cma07g00817 | 1086 | SUPERFAMILY | Ribonuclease H-like | 110 | 532 | IPR012337 | - | |
Cma07g00817 | 1086 | Coils | Coil | 1067 | 1086 | - | - | |
Cma07g00817 | 1086 | Gene3D | - | 814 | 969 | IPR042087 | - | |
Cma07g00817 | 1086 | Gene3D | Palm domain of DNA polymerase | 567 | 797 | IPR023211 | - | |
Cma07g00817 | 1086 | ProSitePatterns | DNA polymerase family B signature. | 740 | 748 | IPR017964 | GO:0000166|GO:0003676 | |
Cma07g00817 | 1086 | Pfam | DNA polymerase family B, exonuclease domain | 119 | 462 | IPR006133 | - | |
Cma07g00817 | 1086 | Gene3D | - | 294 | 512 | IPR036397 | GO:0003676 | |
Cma07g00817 | 1086 | PANTHER | DNA POLYMERASE CATALYTIC SUBUNIT | 82 | 1086 | - | - | |
Cma07g00817 | 1086 | Gene3D | Helix hairpin bin | 641 | 693 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00514 | Cma-Chr2:2783121 | Cma07g00817 | Cma-Chr7:3771937 | 2.65E-45 | dispersed | |
Cma05g01115 | Cma-Chr5:8772772 | Cma07g00817 | Cma-Chr7:3771937 | 1.87E-10 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma07g00817 | K02327 | - | csv:101219332 | 2077.37 |