Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma07g00822 ATGAATGATTTGTTTTCCTCCGATTCCTTCCGTCGGGATCCGCACCACCACTCCGTCGAGATGGGCCCGGACGTTTCGTCGTCAACGACTATCAATCTCAACAATTTCTTTGAAGACGTCGAGTCCGTGAAGGCAAAATTGGTGGAGCTCGAACGCCTCCATCGAAGCCTTCAGAATTCTCACGAACATAGTAAGACGTTGCATAACTCGAAGGCGATTAAGGATCTTCGATCTCGAATGGAATCAGATTTGACTTTGGCTTTGAAGAAAGCTAGGTTTATAAAGCTTCGATTGGAGGAACTCGACCGATCCAATACAGAGAATCGGAATCTTCCTGGTTGTGGCTATGGCTCCTCTGCTGACCGGTCTAGAACTTCCGTTGTCAATGGATTGAGGAAGAATCTTTGTGATTCAATGGAGAATTTCAATCGGTTGAGAGAGGAGATCTCATCGTCGTATAAGGAGACGATTGAACGAAGATATTTTACGATTACAGGGGAAAACCCAGATGAGAAGACTATCGATCTCTTGATCTCTACAGGTGAGAGCGAGACATTCCTACAAAAAGCTATACAAAAGCAAGGAAAAGGAAAAGTTCTAGAAACAATCCAAGAGATTCAAGAAAGGCACGACGCAGTGAAGGACATTGAGAAGAACCTGAAAGAGCTACACCAAGTGTTCATGGACATGGCGGTGCTAGTCCAAACGCAAGGGCAGCATTTGGACGACATTGAGAGCCAAGTGACTCGAGCCAACTCCGCCATCAAGCGCGGTGCCACTGAGCTACAAACCGCAAGACACTACCAAAAAAACACCAGAAAATGGATGTGCATAGGCGGCGCTGCTTTTGTATTTATCCTCTTCATCATTATTCTTTCTGTCGTCCTCGCCAACAAGAAGTAA 903 45.63 MNDLFSSDSFRRDPHHHSVEMGPDVSSSTTINLNNFFEDVESVKAKLVELERLHRSLQNSHEHSKTLHNSKAIKDLRSRMESDLTLALKKARFIKLRLEELDRSNTENRNLPGCGYGSSADRSRTSVVNGLRKNLCDSMENFNRLREEISSSYKETIERRYFTITGENPDEKTIDLLISTGESETFLQKAIQKQGKGKVLETIQEIQERHDAVKDIEKNLKELHQVFMDMAVLVQTQGQHLDDIESQVTRANSAIKRGATELQTARHYQKNTRKWMCIGGAAFVFILFIIILSVVLANKK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3806629 3807769 - CmaCh07G008220.1 Cma07g00822 298137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma07g00822 300 MobiDBLite consensus disorder prediction 1 20 - -
Cma07g00822 300 CDD SNARE_syntaxin1-like 202 264 - -
Cma07g00822 300 PANTHER SYNTAXIN-121 13 294 - -
Cma07g00822 300 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma07g00822 300 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cma07g00822 300 Coils Coil 203 223 - -
Cma07g00822 300 CDD SynN 36 190 IPR006011 GO:0016020
Cma07g00822 300 Gene3D - 192 298 - -
Cma07g00822 300 SMART tSNARE_6 198 265 IPR000727 -
Cma07g00822 300 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cma07g00822 300 SMART SynN_4 28 154 IPR006011 GO:0016020
Cma07g00822 300 MobiDBLite consensus disorder prediction 1 26 - -
Cma07g00822 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cma07g00822 300 Pfam SNARE domain 241 291 IPR000727 -
Cma07g00822 300 Gene3D - 33 160 - -
Cma07g00822 300 Coils Coil 33 60 - -
Cma07g00822 300 PANTHER SYNTAXIN 13 294 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00158 Cma-Chr2:737619 Cma07g00822 Cma-Chr7:3806629 4.40E-12 dispersed
Cma07g00822 Cma-Chr7:3806629 Cma18g00344 Cma-Chr18:1843481 3.61E-111 dispersed
Cma16g01176 Cma-Chr16:9005154 Cma07g00822 Cma-Chr7:3806629 1.42E-11 dispersed
Cma17g01060 Cma-Chr17:7591210 Cma07g00822 Cma-Chr7:3806629 2.07E-07 dispersed
Cma14g00365 Cma-Chr14:1632018 Cma07g00822 Cma-Chr7:3806629 2.78E-136 wgd
Cma06g00530 Cma-Chr6:2498494 Cma07g00822 Cma-Chr7:3806629 1.23E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma07g00822 K08486 - csv:101213443 476.092